Hb_005288_120

Information

Type -
Description -
Location Contig5288: 63535-68677
Sequence    

Annotation

kegg
ID rcu:RCOM_0609590
description protein binding protein, putative
nr
ID XP_012089352.1
description PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
swissprot
ID Q86YJ7
description Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=1 SV=4
trembl
ID A0A067JIQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23555 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat domain-containing protein 13c-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47176: 63535-68644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_120 0.0 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
2 Hb_035524_030 0.0719572143 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010261_020 0.0759377442 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
4 Hb_000017_340 0.0776763213 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
5 Hb_002014_080 0.083405044 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
6 Hb_000085_280 0.0851609303 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
7 Hb_000671_100 0.0894538192 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
8 Hb_014568_030 0.0909929084 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_000077_050 0.0911145434 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_024714_030 0.0929980594 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
11 Hb_000984_180 0.0931650145 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
12 Hb_118301_010 0.0964698716 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
13 Hb_000028_030 0.0968923301 - - amidase, putative [Ricinus communis]
14 Hb_019613_020 0.0983769571 - - phospholipase C, putative [Ricinus communis]
15 Hb_000599_120 0.1001860735 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
16 Hb_013405_130 0.1006140279 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
17 Hb_000684_180 0.1019712821 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
18 Hb_000186_010 0.1020042688 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
19 Hb_003352_050 0.1038590561 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_010866_040 0.1042413843 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005288_120 Hb_005288_120 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_000017_340 Hb_000017_340 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000085_280 Hb_000085_280 Hb_005288_120--Hb_000085_280 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100 Hb_019613_020 Hb_019613_020 Hb_035524_030--Hb_019613_020 Hb_035524_030--Hb_000085_280 Hb_035524_030--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_035524_030--Hb_024714_030 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010 Hb_013405_130 Hb_013405_130 Hb_010261_020--Hb_013405_130 Hb_010298_010 Hb_010298_010 Hb_010261_020--Hb_010298_010 Hb_009558_020 Hb_009558_020 Hb_010261_020--Hb_009558_020 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_063047_010 Hb_063047_010 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_000085_280--Hb_013405_130 Hb_000085_280--Hb_019613_020 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_000671_100--Hb_024714_030 Hb_000671_100--Hb_010298_010 Hb_000671_100--Hb_014568_030 Hb_000671_100--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.268 24.3172 6.91879 22.8187 119.643 191.056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.197 34.793 78.2758 40.5391 22.1763

CAGE analysis