Hb_019613_020

Information

Type -
Description -
Location Contig19613: 24771-28825
Sequence    

Annotation

kegg
ID rcu:RCOM_1410280
description phospholipase C, putative
nr
ID XP_002523622.1
description phospholipase C, putative [Ricinus communis]
swissprot
ID Q93XX5
description PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1
trembl
ID B9SCA3
description Phospholipase C, putative OS=Ricinus communis GN=RCOM_1410280 PE=4 SV=1
Gene Ontology
ID GO:0046658
description pi-plc x domain-containing protein at5g67130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19673: 24847-28722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019613_020 0.0 - - phospholipase C, putative [Ricinus communis]
2 Hb_035524_030 0.0456093952 - - conserved hypothetical protein [Ricinus communis]
3 Hb_127979_010 0.0792898285 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
4 Hb_000085_280 0.0870466774 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
5 Hb_176022_020 0.0907693138 - - cytochrome P450, putative [Ricinus communis]
6 Hb_003404_030 0.0942460954 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_000057_060 0.0944584532 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
8 Hb_004126_010 0.094566923 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
9 Hb_005488_070 0.0946103127 - - putative cytochrome P450 [Oryza sativa Japonica Group]
10 Hb_000005_050 0.0963692308 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
11 Hb_005288_120 0.0983769571 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
12 Hb_000984_180 0.0998226129 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
13 Hb_002506_010 0.1005696827 - - choline transporter-related family protein [Populus trichocarpa]
14 Hb_002391_110 0.1034179387 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
15 Hb_024714_030 0.106126687 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
16 Hb_011316_030 0.1061803878 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
17 Hb_094437_070 0.1066461857 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
18 Hb_003777_220 0.1066960354 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
19 Hb_000599_120 0.1092019151 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
20 Hb_002290_060 0.1100660867 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

Gene co-expression network

sample Hb_019613_020 Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_019613_020--Hb_035524_030 Hb_127979_010 Hb_127979_010 Hb_019613_020--Hb_127979_010 Hb_000085_280 Hb_000085_280 Hb_019613_020--Hb_000085_280 Hb_176022_020 Hb_176022_020 Hb_019613_020--Hb_176022_020 Hb_003404_030 Hb_003404_030 Hb_019613_020--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_019613_020--Hb_000057_060 Hb_035524_030--Hb_000085_280 Hb_005288_120 Hb_005288_120 Hb_035524_030--Hb_005288_120 Hb_000671_100 Hb_000671_100 Hb_035524_030--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_035524_030--Hb_024714_030 Hb_035524_030--Hb_127979_010 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_127979_010--Hb_003404_030 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_013405_130 Hb_013405_130 Hb_000085_280--Hb_013405_130 Hb_000085_280--Hb_005288_120 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_176022_020--Hb_003404_030 Hb_012055_020 Hb_012055_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_009510_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
223.112 27.6922 11.7046 27.6209 227.138 341.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
170.759 64.922 197.195 44.091 14.814

CAGE analysis