Hb_012055_020

Information

Type -
Description -
Location Contig12055: 16504-24153
Sequence    

Annotation

kegg
ID rcu:RCOM_1154780
description natural resistance-associated macrophage protein, putative
nr
ID XP_012079337.1
description PREDICTED: metal transporter Nramp3 [Jatropha curcas]
swissprot
ID Q9SNV9
description Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2
trembl
ID A0A067KJL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12485 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06395: 16702-24056 , PASA_asmbl_06396: 18770-23719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_020 0.0 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
2 Hb_176022_020 0.0914973119 - - cytochrome P450, putative [Ricinus communis]
3 Hb_005227_070 0.0934423024 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000984_180 0.0951498901 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
5 Hb_034083_010 0.0972353321 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000230_110 0.097798062 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
7 Hb_073171_110 0.105993926 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_000077_130 0.1068501396 - - PREDICTED: callose synthase 12 [Jatropha curcas]
9 Hb_000236_250 0.1071971653 - - conserved hypothetical protein [Ricinus communis]
10 Hb_040996_010 0.1079313602 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
11 Hb_000078_130 0.1087295019 - - -
12 Hb_006091_030 0.1087336386 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
13 Hb_011316_110 0.1087775327 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
14 Hb_004156_060 0.109759671 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
15 Hb_001040_170 0.1114792648 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000088_040 0.1115943707 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
17 Hb_000599_120 0.1120154468 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
18 Hb_007447_010 0.1156636184 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
19 Hb_014568_030 0.1157172987 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
20 Hb_185467_020 0.1157722554 - - Cucumisin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012055_020 Hb_012055_020 Hb_176022_020 Hb_176022_020 Hb_012055_020--Hb_176022_020 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_000230_110 Hb_000230_110 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_003404_030 Hb_003404_030 Hb_176022_020--Hb_003404_030 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_005227_070--Hb_034083_010 Hb_000291_280 Hb_000291_280 Hb_005227_070--Hb_000291_280 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_098993_010 Hb_098993_010 Hb_005227_070--Hb_098993_010 Hb_005227_070--Hb_000088_040 Hb_000599_120 Hb_000599_120 Hb_000984_180--Hb_000599_120 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000057_060 Hb_000057_060 Hb_000984_180--Hb_000057_060 Hb_001416_040 Hb_001416_040 Hb_000984_180--Hb_001416_040 Hb_001433_170 Hb_001433_170 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_034083_010--Hb_000230_110 Hb_000230_110--Hb_003404_030 Hb_000230_110--Hb_176022_020 Hb_006029_010 Hb_006029_010 Hb_000230_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000230_110--Hb_004156_060 Hb_000230_110--Hb_000088_040 Hb_012340_010 Hb_012340_010 Hb_073171_110--Hb_012340_010 Hb_003030_020 Hb_003030_020 Hb_073171_110--Hb_003030_020 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_000997_210 Hb_000997_210 Hb_073171_110--Hb_000997_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.387 14.2059 5.7384 23.459 170.452 169.751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.3874 47.9053 132.462 34.6957 27.4736

CAGE analysis