Hb_000997_210

Information

Type -
Description -
Location Contig997: 188498-191683
Sequence    

Annotation

kegg
ID rcu:RCOM_0909060
description protein transport protein sec23, putative
nr
ID XP_012069760.1
description PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
swissprot
ID O74873
description Protein transport protein sec23-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec231 PE=3 SV=1
trembl
ID A0A067L710
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02273 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64874: 188162-188506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_210 0.0 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
2 Hb_007558_140 0.0822227234 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
3 Hb_153258_010 0.0900673164 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
4 Hb_098993_010 0.1022999461 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
5 Hb_002027_130 0.1026394534 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
6 Hb_073171_110 0.1026451069 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
7 Hb_002299_060 0.1030499031 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
8 Hb_003030_020 0.1051477116 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
9 Hb_000041_150 0.1051616682 - - Stachyose synthase precursor, putative [Ricinus communis]
10 Hb_009048_040 0.1052697554 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_011918_080 0.1056151174 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
12 Hb_012340_010 0.1063885662 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
13 Hb_007575_040 0.1067741153 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
14 Hb_010638_020 0.1081516105 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
15 Hb_010863_080 0.1124031728 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
16 Hb_182026_020 0.1136036128 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_007304_110 0.1136517823 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
18 Hb_002182_040 0.1136992652 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_003297_030 0.1137043497 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
20 Hb_000836_630 0.1138681214 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_210 Hb_000997_210 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_153258_010 Hb_153258_010 Hb_000997_210--Hb_153258_010 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_011918_080 Hb_011918_080 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_007558_140--Hb_153258_010 Hb_000041_150 Hb_000041_150 Hb_153258_010--Hb_000041_150 Hb_000120_050 Hb_000120_050 Hb_153258_010--Hb_000120_050 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_153258_010--Hb_002027_130 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_098993_010--Hb_007558_140 Hb_000436_070 Hb_000436_070 Hb_002027_130--Hb_000436_070 Hb_007908_020 Hb_007908_020 Hb_002027_130--Hb_007908_020 Hb_000025_200 Hb_000025_200 Hb_002027_130--Hb_000025_200 Hb_000001_020 Hb_000001_020 Hb_002027_130--Hb_000001_020 Hb_003609_040 Hb_003609_040 Hb_002027_130--Hb_003609_040 Hb_000120_950 Hb_000120_950 Hb_002027_130--Hb_000120_950 Hb_012340_010 Hb_012340_010 Hb_073171_110--Hb_012340_010 Hb_003030_020 Hb_003030_020 Hb_073171_110--Hb_003030_020 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020 Hb_000898_040 Hb_000898_040 Hb_002299_060--Hb_000898_040 Hb_002299_060--Hb_001085_170 Hb_002299_060--Hb_007558_140 Hb_002217_300 Hb_002217_300 Hb_002299_060--Hb_002217_300 Hb_089032_040 Hb_089032_040 Hb_002299_060--Hb_089032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.389 2.6609 2.69162 5.36101 16.0671 9.91964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66636 7.28456 16.9048 3.73016 3.59736

CAGE analysis