Hb_002299_060

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2299: 150775-167901
Sequence    

Annotation

kegg
ID rcu:RCOM_0746010
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012073103.1
description PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LC85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06607 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at2g39360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23920: 146638-149805 , PASA_asmbl_23921: 146675-149852 , PASA_asmbl_23922: 146675-149852 , PASA_asmbl_23923: 159118-159987 , PASA_asmbl_23924: 160097-160225 , PASA_asmbl_23926: 164246-164381 , PASA_asmbl_23927: 164764-165565 , PASA_asmbl_23928: 165582-166492 , PASA_asmbl_23929: 166549-167182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002299_060 0.0 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
2 Hb_000898_040 0.0924508545 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_001085_170 0.1010128762 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
4 Hb_007558_140 0.1012790655 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_000997_210 0.1030499031 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_002217_300 0.1044760472 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
7 Hb_089032_040 0.1055177875 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
8 Hb_004046_020 0.1065773748 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
9 Hb_000207_250 0.1090724096 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
10 Hb_003195_070 0.1100963584 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_008695_180 0.112498905 - - eukaryotic translation initiation factor [Hevea brasiliensis]
12 Hb_003195_060 0.1127327399 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
13 Hb_000169_090 0.1130108731 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
14 Hb_174541_020 0.1134725314 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
15 Hb_011918_080 0.1165093672 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_003943_040 0.1225850773 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000080_190 0.1227106114 - - -
18 Hb_004976_030 0.1236911152 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
19 Hb_002307_100 0.1240398177 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
20 Hb_000510_320 0.1247117929 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]

Gene co-expression network

sample Hb_002299_060 Hb_002299_060 Hb_000898_040 Hb_000898_040 Hb_002299_060--Hb_000898_040 Hb_001085_170 Hb_001085_170 Hb_002299_060--Hb_001085_170 Hb_007558_140 Hb_007558_140 Hb_002299_060--Hb_007558_140 Hb_000997_210 Hb_000997_210 Hb_002299_060--Hb_000997_210 Hb_002217_300 Hb_002217_300 Hb_002299_060--Hb_002217_300 Hb_089032_040 Hb_089032_040 Hb_002299_060--Hb_089032_040 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_001085_170--Hb_007558_140 Hb_002006_090 Hb_002006_090 Hb_001085_170--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001085_170--Hb_000614_230 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_007558_140--Hb_000997_210 Hb_000997_210--Hb_153258_010 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_002217_300--Hb_089032_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_000395_190 Hb_000395_190 Hb_089032_040--Hb_000395_190 Hb_010128_080 Hb_010128_080 Hb_089032_040--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_089032_040--Hb_000061_460 Hb_005731_130 Hb_005731_130 Hb_089032_040--Hb_005731_130 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6118 5.81009 1.98575 11.6511 15.8791 14.7296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4434 9.86681 23.5058 6.80264 5.40723

CAGE analysis