Hb_002477_160

Information

Type -
Description -
Location Contig2477: 119219-120259
Sequence    

Annotation

kegg
ID rcu:RCOM_0654330
description Mitochondrial carrier protein RIM2, putative
nr
ID XP_010087691.1
description hypothetical protein L484_013453 [Morus notabilis]
swissprot
ID Q8BGF9
description Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1
trembl
ID W9QNN2
description Uncharacterized protein OS=Morus notabilis GN=L484_013453 PE=3 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 25 member 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_160 0.0 - - hypothetical protein L484_013453 [Morus notabilis]
2 Hb_002307_100 0.0547369095 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
3 Hb_175338_030 0.0588975908 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
4 Hb_007558_140 0.0625965719 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_000120_950 0.0626842948 - - PREDICTED: protein GRIP [Jatropha curcas]
6 Hb_000754_060 0.0633452509 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
7 Hb_011918_080 0.0635552668 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
8 Hb_000030_010 0.0707717805 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
9 Hb_000661_050 0.071887478 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
10 Hb_004046_010 0.0719710166 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
11 Hb_007908_020 0.0744411268 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000836_360 0.0758695081 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
13 Hb_000190_140 0.0765510596 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_015306_020 0.0809199325 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
15 Hb_005062_070 0.0828409872 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
16 Hb_001584_330 0.083851374 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
17 Hb_001623_420 0.0838679884 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_001635_100 0.084076875 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
19 Hb_001454_210 0.0847941156 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
20 Hb_001085_170 0.0856223143 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_160 Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_002307_100--Hb_175338_030 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_002307_100--Hb_007558_140 Hb_175338_030--Hb_010175_020 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_007558_140--Hb_011918_080 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000754_060--Hb_000190_140 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.0998 39.1847 14.3255 25.5757 72.7279 79.3876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.4623 47.8572 92.5135 22.8077 20.3049

CAGE analysis