Hb_010175_020

Information

Type -
Description -
Location Contig10175: 37597-38973
Sequence    

Annotation

kegg
ID rcu:RCOM_0338870
description cysteine desulfurylase, putative (EC:2.8.1.7)
nr
ID XP_012079479.1
description PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID O49543
description Cysteine desulfurase, mitochondrial OS=Arabidopsis thaliana GN=NIFS1 PE=1 SV=1
trembl
ID B9T178
description Cysteine desulfurylase, putative OS=Ricinus communis GN=RCOM_0338870 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cysteine desulfurase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00869: 37211-38989
cDNA
(Sanger)
(ID:Location)		 003_E01.ab1: 38190-38989 , 008_O13r.ab1: 39327-40762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010175_020 0.0 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000152_820 0.0492421833 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
3 Hb_007757_110 0.0575462387 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_175338_030 0.0620618162 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
5 Hb_002307_100 0.0632020694 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_000317_020 0.0751347045 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
7 Hb_000413_180 0.0789445068 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_001736_040 0.0808482362 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
9 Hb_004837_040 0.0831412144 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
10 Hb_001584_160 0.0848011663 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
11 Hb_007101_170 0.0852435117 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
12 Hb_000619_080 0.0857544369 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
13 Hb_002026_100 0.0862486172 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_001975_160 0.0873856084 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000661_050 0.0876519416 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
16 Hb_010710_010 0.0880784472 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_181235_010 0.0883018342 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
18 Hb_000291_110 0.0884299491 - - eukaryotic translation initiation factor [Hevea brasiliensis]
19 Hb_001728_100 0.0892559415 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
20 Hb_002477_160 0.0895276577 - - hypothetical protein L484_013453 [Morus notabilis]

Gene co-expression network

sample Hb_010175_020 Hb_010175_020 Hb_000152_820 Hb_000152_820 Hb_010175_020--Hb_000152_820 Hb_007757_110 Hb_007757_110 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_010175_020--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_000152_820--Hb_000317_020 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_007757_110--Hb_002307_100 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_175338_030--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_175338_030--Hb_002477_160 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_002307_100--Hb_002477_160 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_000317_020--Hb_001736_040 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000317_020--Hb_000661_050 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_010710_010 Hb_010710_010 Hb_000413_180--Hb_010710_010 Hb_000230_080 Hb_000230_080 Hb_000413_180--Hb_000230_080 Hb_003750_080 Hb_003750_080 Hb_000413_180--Hb_003750_080 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.652 124.886 25.6825 51.7069 190.227 157.27
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.799 103.468 189.863 90.9002 55.3527

CAGE analysis