Hb_000386_030

Information

Type -
Description -
Location Contig386: 35262-44715
Sequence    

Annotation

kegg
ID rcu:RCOM_1267370
description hypothetical protein
nr
ID XP_012066216.1
description PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
swissprot
ID Q54KN2
description Gem-associated protein 2 OS=Dictyostelium discoideum GN=gemin2 PE=3 SV=1
trembl
ID A0A067L365
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23794 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38826: 35591-35979 , PASA_asmbl_38827: 41413-43929 , PASA_asmbl_38828: 43968-44205 , PASA_asmbl_38829: 44206-44496
cDNA
(Sanger)
(ID:Location)		 046_J06.ab1: 41413-43929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000386_030 0.0 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
2 Hb_001584_160 0.0780341527 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
3 Hb_000577_010 0.0792846556 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
4 Hb_001437_180 0.0823032781 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
5 Hb_010710_010 0.0832296781 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
6 Hb_000803_190 0.0851657427 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_000413_180 0.0866438388 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_001771_130 0.087838777 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
9 Hb_033152_080 0.0887941247 - - RNA-binding protein Nova-1, putative [Ricinus communis]
10 Hb_000152_820 0.0933840212 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
11 Hb_000230_080 0.0942116553 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_002477_030 0.0945558345 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
13 Hb_002986_130 0.0948651995 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
14 Hb_004734_060 0.0961610892 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
15 Hb_001720_050 0.0976886683 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
16 Hb_007757_110 0.0982289424 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_002810_020 0.1004694497 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
18 Hb_002636_050 0.1008620892 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
19 Hb_000207_390 0.1009223072 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_003750_080 0.1010508823 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000386_030 Hb_000386_030 Hb_001584_160 Hb_001584_160 Hb_000386_030--Hb_001584_160 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_001437_180 Hb_001437_180 Hb_000386_030--Hb_001437_180 Hb_010710_010 Hb_010710_010 Hb_000386_030--Hb_010710_010 Hb_000803_190 Hb_000803_190 Hb_000386_030--Hb_000803_190 Hb_000413_180 Hb_000413_180 Hb_000386_030--Hb_000413_180 Hb_031042_020 Hb_031042_020 Hb_001584_160--Hb_031042_020 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_002986_130 Hb_002986_130 Hb_001584_160--Hb_002986_130 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_001584_160--Hb_000413_180 Hb_007163_090 Hb_007163_090 Hb_000577_010--Hb_007163_090 Hb_004724_060 Hb_004724_060 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_001797_050 Hb_001797_050 Hb_000577_010--Hb_001797_050 Hb_002636_050 Hb_002636_050 Hb_001437_180--Hb_002636_050 Hb_004734_060 Hb_004734_060 Hb_001437_180--Hb_004734_060 Hb_001771_130 Hb_001771_130 Hb_001437_180--Hb_001771_130 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_010710_010--Hb_000413_180 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_000413_180--Hb_000230_080 Hb_000413_180--Hb_010175_020 Hb_000413_180--Hb_003750_080 Hb_000413_180--Hb_000152_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7809 9.21007 1.5476 1.99717 10.8646 16.5859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35109 7.77024 11.716 7.73092 4.22824

CAGE analysis