Hb_031042_020

Information

Type -
Description -
Location Contig31042: 9099-11485
Sequence    

Annotation

kegg
ID tcc:TCM_015957
description Pentatricopeptide repeat superfamily protein, putative
nr
ID XP_012069992.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
swissprot
ID Q9FGL1
description Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1
trembl
ID A0A061G554
description Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_015957 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32848: 10050-10312 , PASA_asmbl_32849: 10815-11095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
2 Hb_002986_130 0.058761093 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
3 Hb_001584_160 0.0810199738 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
4 Hb_001266_060 0.0852983872 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
5 Hb_001956_200 0.0896394117 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
6 Hb_001584_150 0.0954451338 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
7 Hb_000574_410 0.0972708229 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
8 Hb_000025_520 0.1008716492 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
9 Hb_010172_090 0.1016692061 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004452_010 0.1017298618 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
11 Hb_007757_110 0.1021148338 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
12 Hb_008500_010 0.1022177186 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
13 Hb_000928_300 0.1026300259 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
14 Hb_000204_210 0.1047252024 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
15 Hb_003020_050 0.1055903928 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006316_040 0.1064829512 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
17 Hb_001141_390 0.1084925569 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
18 Hb_001975_160 0.1095653657 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002813_050 0.1108089164 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
20 Hb_012395_220 0.1123597062 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]

Gene co-expression network

sample Hb_031042_020 Hb_031042_020 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_001266_060 Hb_001266_060 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410 Hb_002986_130--Hb_001584_160 Hb_000390_070 Hb_000390_070 Hb_002986_130--Hb_000390_070 Hb_000386_030 Hb_000386_030 Hb_002986_130--Hb_000386_030 Hb_007757_110 Hb_007757_110 Hb_002986_130--Hb_007757_110 Hb_002986_130--Hb_001266_060 Hb_001584_160--Hb_000386_030 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_000413_180 Hb_000413_180 Hb_001584_160--Hb_000413_180 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001266_060--Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001266_060--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_001266_060--Hb_000427_050 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_001956_200--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_001956_200--Hb_008500_010 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_001584_150--Hb_008500_010 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_000928_300 Hb_000928_300 Hb_000574_410--Hb_000928_300 Hb_000453_170 Hb_000453_170 Hb_000574_410--Hb_000453_170 Hb_006316_040 Hb_006316_040 Hb_000574_410--Hb_006316_040 Hb_001141_390 Hb_001141_390 Hb_000574_410--Hb_001141_390 Hb_000031_050 Hb_000031_050 Hb_000574_410--Hb_000031_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97356 2.66667 0.401089 0.404683 2.29601 2.52733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.979426 1.87407 3.58823 1.37952 0.925707

CAGE analysis