Hb_000928_300

Information

Type -
Description -
Location Contig928: 255641-258316
Sequence    

Annotation

kegg
ID tcc:TCM_025711
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative
nr
ID XP_012070303.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
swissprot
ID Q9SS60
description Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
trembl
ID A0A061F0B0
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_025711 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g03580

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_300 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
2 Hb_000574_410 0.0908955797 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
3 Hb_002188_110 0.0912936857 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_009851_070 0.093619706 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
5 Hb_003467_020 0.0941221271 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
6 Hb_008775_040 0.0996719575 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
7 Hb_008500_010 0.1007793996 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
8 Hb_006316_040 0.1020255125 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
9 Hb_031042_020 0.1026300259 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
10 Hb_005015_070 0.104339085 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
11 Hb_000264_320 0.1079189324 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
12 Hb_183963_030 0.1085932945 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002477_030 0.1097158899 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
14 Hb_010172_090 0.1097552922 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001818_070 0.1099667424 - - carbon catabolite repressor protein, putative [Ricinus communis]
16 Hb_140506_010 0.1120927712 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
17 Hb_000204_210 0.1135783378 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
18 Hb_000140_230 0.1136932315 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
19 Hb_002701_040 0.1148380389 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
20 Hb_000174_220 0.1159113281 - - cohesin subunit rad21, putative [Ricinus communis]

Gene co-expression network

sample Hb_000928_300 Hb_000928_300 Hb_000574_410 Hb_000574_410 Hb_000928_300--Hb_000574_410 Hb_002188_110 Hb_002188_110 Hb_000928_300--Hb_002188_110 Hb_009851_070 Hb_009851_070 Hb_000928_300--Hb_009851_070 Hb_003467_020 Hb_003467_020 Hb_000928_300--Hb_003467_020 Hb_008775_040 Hb_008775_040 Hb_000928_300--Hb_008775_040 Hb_008500_010 Hb_008500_010 Hb_000928_300--Hb_008500_010 Hb_000453_170 Hb_000453_170 Hb_000574_410--Hb_000453_170 Hb_031042_020 Hb_031042_020 Hb_000574_410--Hb_031042_020 Hb_006316_040 Hb_006316_040 Hb_000574_410--Hb_006316_040 Hb_001141_390 Hb_001141_390 Hb_000574_410--Hb_001141_390 Hb_000031_050 Hb_000031_050 Hb_000574_410--Hb_000031_050 Hb_183963_030 Hb_183963_030 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_000796_030 Hb_000796_030 Hb_009851_070--Hb_000796_030 Hb_000009_600 Hb_000009_600 Hb_009851_070--Hb_000009_600 Hb_002234_170 Hb_002234_170 Hb_009851_070--Hb_002234_170 Hb_000174_220 Hb_000174_220 Hb_009851_070--Hb_000174_220 Hb_009503_030 Hb_009503_030 Hb_009851_070--Hb_009503_030 Hb_003785_040 Hb_003785_040 Hb_009851_070--Hb_003785_040 Hb_004767_050 Hb_004767_050 Hb_003467_020--Hb_004767_050 Hb_003455_020 Hb_003455_020 Hb_003467_020--Hb_003455_020 Hb_003467_020--Hb_002188_110 Hb_002890_090 Hb_002890_090 Hb_003467_020--Hb_002890_090 Hb_001818_070 Hb_001818_070 Hb_003467_020--Hb_001818_070 Hb_003467_020--Hb_008500_010 Hb_000264_320 Hb_000264_320 Hb_008775_040--Hb_000264_320 Hb_000175_220 Hb_000175_220 Hb_008775_040--Hb_000175_220 Hb_002636_100 Hb_002636_100 Hb_008775_040--Hb_002636_100 Hb_003020_050 Hb_003020_050 Hb_008775_040--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_008775_040--Hb_000140_230 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.588707 1.1841 0.254714 0.26505 0.959053 0.907221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279038 0.800804 0.961606 0.39475 0.439931

CAGE analysis