Hb_000574_410

Information

Type -
Description -
Location Contig574: 356740-358857
Sequence    

Annotation

kegg
ID pxb:103957648
description pentatricopeptide repeat-containing protein At2g13600
nr
ID XP_012073146.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
swissprot
ID Q9SIT7
description Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
trembl
ID V4SCT8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000448mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at2g13600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49585: 356639-357190 , PASA_asmbl_49586: 357228-357476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_410 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
2 Hb_000928_300 0.0908955797 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
3 Hb_000453_170 0.0964189029 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_031042_020 0.0972708229 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
5 Hb_006316_040 0.0973918527 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
6 Hb_001141_390 0.0991622026 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
7 Hb_000031_050 0.0995618443 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
8 Hb_001584_150 0.0996493945 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
9 Hb_006573_200 0.1005083767 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
10 Hb_010172_090 0.1017293218 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_007757_110 0.1039532512 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
12 Hb_124315_020 0.1048229139 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_011316_050 0.1052746931 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
14 Hb_160233_010 0.1054778732 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
15 Hb_000264_320 0.1067679846 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
16 Hb_001507_020 0.1067823455 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
17 Hb_008500_010 0.1076673194 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
18 Hb_001975_160 0.1086308219 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000827_070 0.1093261189 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_009851_070 0.1100268988 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_410 Hb_000574_410 Hb_000928_300 Hb_000928_300 Hb_000574_410--Hb_000928_300 Hb_000453_170 Hb_000453_170 Hb_000574_410--Hb_000453_170 Hb_031042_020 Hb_031042_020 Hb_000574_410--Hb_031042_020 Hb_006316_040 Hb_006316_040 Hb_000574_410--Hb_006316_040 Hb_001141_390 Hb_001141_390 Hb_000574_410--Hb_001141_390 Hb_000031_050 Hb_000031_050 Hb_000574_410--Hb_000031_050 Hb_002188_110 Hb_002188_110 Hb_000928_300--Hb_002188_110 Hb_009851_070 Hb_009851_070 Hb_000928_300--Hb_009851_070 Hb_003467_020 Hb_003467_020 Hb_000928_300--Hb_003467_020 Hb_008775_040 Hb_008775_040 Hb_000928_300--Hb_008775_040 Hb_008500_010 Hb_008500_010 Hb_000928_300--Hb_008500_010 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_001266_060 Hb_001266_060 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_006316_040--Hb_008500_010 Hb_006316_040--Hb_011316_050 Hb_006316_040--Hb_000827_070 Hb_010172_090 Hb_010172_090 Hb_006316_040--Hb_010172_090 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001141_390--Hb_001584_150 Hb_006573_200 Hb_006573_200 Hb_000031_050--Hb_006573_200 Hb_006649_060 Hb_006649_060 Hb_000031_050--Hb_006649_060 Hb_000077_230 Hb_000077_230 Hb_000031_050--Hb_000077_230 Hb_004204_080 Hb_004204_080 Hb_000031_050--Hb_004204_080 Hb_007757_110 Hb_007757_110 Hb_000031_050--Hb_007757_110 Hb_124315_020 Hb_124315_020 Hb_000031_050--Hb_124315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.613 12.7162 3.57305 2.97694 12.664 8.90712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33786 9.75017 14.5921 4.37406 5.46854

CAGE analysis