Hb_002374_310

Information

Type -
Description -
Location Contig2374: 259284-264762
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08250g
description POPTRDRAFT_816266; hypothetical protein
nr
ID XP_012078261.1
description PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GU25
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08250g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24890: 259354-264720 , PASA_asmbl_24891: 262858-263079 , PASA_asmbl_24892: 263158-263484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_310 0.0 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
2 Hb_001141_390 0.090719087 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
3 Hb_001856_230 0.097694109 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
4 Hb_001621_150 0.0981498231 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
5 Hb_000181_070 0.0998887901 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005015_070 0.1041212521 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
7 Hb_007532_030 0.1100395996 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
8 Hb_000768_040 0.1106528167 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
9 Hb_048219_010 0.1110753962 - - coronatine-insensitive 1 [Hevea brasiliensis]
10 Hb_012807_050 0.1132388923 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
11 Hb_012564_030 0.1132741978 - - coronatine-insensitive 1 [Hevea brasiliensis]
12 Hb_000204_210 0.1143679691 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
13 Hb_001021_170 0.1160978748 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
14 Hb_001195_600 0.1161700724 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
15 Hb_005551_050 0.1167808202 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
16 Hb_001318_030 0.1168242731 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
17 Hb_027506_020 0.1172812487 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
18 Hb_004128_060 0.1175219156 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
19 Hb_000125_170 0.1179356251 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
20 Hb_005843_100 0.1194599746 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]

Gene co-expression network

sample Hb_002374_310 Hb_002374_310 Hb_001141_390 Hb_001141_390 Hb_002374_310--Hb_001141_390 Hb_001856_230 Hb_001856_230 Hb_002374_310--Hb_001856_230 Hb_001621_150 Hb_001621_150 Hb_002374_310--Hb_001621_150 Hb_000181_070 Hb_000181_070 Hb_002374_310--Hb_000181_070 Hb_005015_070 Hb_005015_070 Hb_002374_310--Hb_005015_070 Hb_007532_030 Hb_007532_030 Hb_002374_310--Hb_007532_030 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_012564_030 Hb_012564_030 Hb_001856_230--Hb_012564_030 Hb_001856_230--Hb_048219_010 Hb_003544_110 Hb_003544_110 Hb_001856_230--Hb_003544_110 Hb_001856_230--Hb_007532_030 Hb_000331_670 Hb_000331_670 Hb_001856_230--Hb_000331_670 Hb_005016_160 Hb_005016_160 Hb_001621_150--Hb_005016_160 Hb_000732_140 Hb_000732_140 Hb_001621_150--Hb_000732_140 Hb_000567_210 Hb_000567_210 Hb_001621_150--Hb_000567_210 Hb_001021_170 Hb_001021_170 Hb_001621_150--Hb_001021_170 Hb_004785_060 Hb_004785_060 Hb_001621_150--Hb_004785_060 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_007416_180 Hb_007416_180 Hb_000181_070--Hb_007416_180 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_031527_040 Hb_031527_040 Hb_000181_070--Hb_031527_040 Hb_000181_070--Hb_007532_030 Hb_000696_150 Hb_000696_150 Hb_005015_070--Hb_000696_150 Hb_004374_070 Hb_004374_070 Hb_005015_070--Hb_004374_070 Hb_010172_090 Hb_010172_090 Hb_005015_070--Hb_010172_090 Hb_000866_220 Hb_000866_220 Hb_005015_070--Hb_000866_220 Hb_005015_070--Hb_048219_010 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5738 18.2315 4.27277 5.23729 8.28053 13.351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0685 11.23 17.0437 3.05424 5.1409

CAGE analysis