Hb_000696_150

Information

Type -
Description -
Location Contig696: 84106-85812
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11170g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012088483.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
swissprot
ID Q0WVU0
description Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1
trembl
ID U5GHD0
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0005s11170g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g51320

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
2 Hb_000679_090 0.0723437996 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
3 Hb_000866_220 0.0781848737 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
4 Hb_004586_340 0.0790180266 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
5 Hb_000056_210 0.0795079537 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
6 Hb_005015_070 0.082195091 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
7 Hb_001157_040 0.0867329812 - - casein kinase, putative [Ricinus communis]
8 Hb_004374_070 0.0870064096 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
9 Hb_000056_240 0.0938642013 - - PREDICTED: cullin-3A [Jatropha curcas]
10 Hb_008725_260 0.0958363027 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_000976_310 0.0974508363 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
12 Hb_000189_560 0.099725115 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_004994_140 0.103353701 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
14 Hb_000465_460 0.1045580466 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
15 Hb_001838_060 0.1048041982 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
16 Hb_001195_600 0.1048433904 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
17 Hb_004128_060 0.1048606108 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
18 Hb_000033_020 0.1058069341 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_012107_060 0.1068599002 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_003376_350 0.1077799512 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_150 Hb_000696_150 Hb_000679_090 Hb_000679_090 Hb_000696_150--Hb_000679_090 Hb_000866_220 Hb_000866_220 Hb_000696_150--Hb_000866_220 Hb_004586_340 Hb_004586_340 Hb_000696_150--Hb_004586_340 Hb_000056_210 Hb_000056_210 Hb_000696_150--Hb_000056_210 Hb_005015_070 Hb_005015_070 Hb_000696_150--Hb_005015_070 Hb_001157_040 Hb_001157_040 Hb_000696_150--Hb_001157_040 Hb_007426_180 Hb_007426_180 Hb_000679_090--Hb_007426_180 Hb_004994_140 Hb_004994_140 Hb_000679_090--Hb_004994_140 Hb_003376_350 Hb_003376_350 Hb_000679_090--Hb_003376_350 Hb_012107_060 Hb_012107_060 Hb_000679_090--Hb_012107_060 Hb_000117_090 Hb_000117_090 Hb_000679_090--Hb_000117_090 Hb_000866_220--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_001242_060 Hb_001242_060 Hb_004586_340--Hb_001242_060 Hb_004586_340--Hb_008725_260 Hb_000876_070 Hb_000876_070 Hb_004586_340--Hb_000876_070 Hb_008221_140 Hb_008221_140 Hb_004586_340--Hb_008221_140 Hb_005779_060 Hb_005779_060 Hb_004586_340--Hb_005779_060 Hb_000904_070 Hb_000904_070 Hb_000056_210--Hb_000904_070 Hb_001195_600 Hb_001195_600 Hb_000056_210--Hb_001195_600 Hb_000342_060 Hb_000342_060 Hb_000056_210--Hb_000342_060 Hb_000056_210--Hb_000866_220 Hb_004374_070 Hb_004374_070 Hb_000056_210--Hb_004374_070 Hb_005015_070--Hb_004374_070 Hb_010172_090 Hb_010172_090 Hb_005015_070--Hb_010172_090 Hb_001141_390 Hb_001141_390 Hb_005015_070--Hb_001141_390 Hb_005015_070--Hb_000866_220 Hb_048219_010 Hb_048219_010 Hb_005015_070--Hb_048219_010 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.715514 1.18776 0.444185 0.384372 0.546976 0.92029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.754536 1.63254 1.24052 0.532295 0.490354

CAGE analysis