Hb_000056_210

Information

Type -
Description -
Location Contig56: 314915-316657
Sequence    

Annotation

kegg
ID pmum:103321598
description pentatricopeptide repeat-containing protein At1g26900, mitochondrial
nr
ID XP_012067617.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZVG8
description Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1
trembl
ID A0A067L1U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15585 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48714: 316041-316204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_210 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
2 Hb_000696_150 0.0795079537 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
3 Hb_000904_070 0.0875435022 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
4 Hb_001195_600 0.0923295895 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
5 Hb_000342_060 0.0941403996 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
6 Hb_000866_220 0.0964572878 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
7 Hb_004374_070 0.096752804 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_001157_040 0.0993134356 - - casein kinase, putative [Ricinus communis]
9 Hb_002813_040 0.1065147396 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
10 Hb_000056_240 0.1066677767 - - PREDICTED: cullin-3A [Jatropha curcas]
11 Hb_008725_260 0.1090155136 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
12 Hb_000164_020 0.1090650194 - - actin binding protein, putative [Ricinus communis]
13 Hb_000788_100 0.1092522375 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
14 Hb_002046_180 0.1099331585 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
15 Hb_002701_020 0.1108504671 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_004586_340 0.1113713599 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
17 Hb_012019_010 0.1128115821 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
18 Hb_001247_250 0.1141666007 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
19 Hb_001246_110 0.1144662767 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
20 Hb_001838_060 0.1148609442 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_210 Hb_000056_210 Hb_000696_150 Hb_000696_150 Hb_000056_210--Hb_000696_150 Hb_000904_070 Hb_000904_070 Hb_000056_210--Hb_000904_070 Hb_001195_600 Hb_001195_600 Hb_000056_210--Hb_001195_600 Hb_000342_060 Hb_000342_060 Hb_000056_210--Hb_000342_060 Hb_000866_220 Hb_000866_220 Hb_000056_210--Hb_000866_220 Hb_004374_070 Hb_004374_070 Hb_000056_210--Hb_004374_070 Hb_000679_090 Hb_000679_090 Hb_000696_150--Hb_000679_090 Hb_000696_150--Hb_000866_220 Hb_004586_340 Hb_004586_340 Hb_000696_150--Hb_004586_340 Hb_005015_070 Hb_005015_070 Hb_000696_150--Hb_005015_070 Hb_001157_040 Hb_001157_040 Hb_000696_150--Hb_001157_040 Hb_000788_100 Hb_000788_100 Hb_000904_070--Hb_000788_100 Hb_002701_020 Hb_002701_020 Hb_000904_070--Hb_002701_020 Hb_005694_110 Hb_005694_110 Hb_000904_070--Hb_005694_110 Hb_000465_460 Hb_000465_460 Hb_000904_070--Hb_000465_460 Hb_003952_090 Hb_003952_090 Hb_000904_070--Hb_003952_090 Hb_055488_010 Hb_055488_010 Hb_001195_600--Hb_055488_010 Hb_029866_090 Hb_029866_090 Hb_001195_600--Hb_029866_090 Hb_008725_260 Hb_008725_260 Hb_001195_600--Hb_008725_260 Hb_000915_090 Hb_000915_090 Hb_001195_600--Hb_000915_090 Hb_002813_040 Hb_002813_040 Hb_001195_600--Hb_002813_040 Hb_000164_020 Hb_000164_020 Hb_000342_060--Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000342_060--Hb_001246_110 Hb_095296_010 Hb_095296_010 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380 Hb_000866_220--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46974 2.27591 1.10438 1.21339 1.11573 2.24353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31601 3.37546 2.30758 0.726042 1.43787

CAGE analysis