Hb_055488_010

Information

Type -
Description -
Location Contig55488: 6283-10235
Sequence    

Annotation

kegg
ID rcu:RCOM_0003540
description protein translocase, putative
nr
ID XP_012081167.1
description PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
swissprot
ID Q6S5G3
description Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1
trembl
ID A0A067KDC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48466: 6303-10619 , PASA_asmbl_48469: 8932-10625 , PASA_asmbl_48470: 7271-7510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055488_010 0.0 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
2 Hb_001195_600 0.0696836141 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
3 Hb_000512_060 0.091625248 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
4 Hb_001100_060 0.0932141045 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
5 Hb_004678_040 0.0946527776 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
6 Hb_000671_050 0.0953819443 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_000416_040 0.0963270315 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
8 Hb_000915_090 0.0964990271 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
9 Hb_008725_260 0.0970751808 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_029866_090 0.0975143 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
11 Hb_002046_180 0.0975241501 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
12 Hb_000876_070 0.1004518567 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_000928_210 0.1028630518 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
14 Hb_001766_060 0.1031320198 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004724_080 0.1035579836 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001246_110 0.1042496134 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
17 Hb_002490_020 0.1043324401 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
18 Hb_017358_030 0.1044558256 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
19 Hb_000789_060 0.1056690542 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
20 Hb_000003_250 0.1068112101 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_055488_010 Hb_055488_010 Hb_001195_600 Hb_001195_600 Hb_055488_010--Hb_001195_600 Hb_000512_060 Hb_000512_060 Hb_055488_010--Hb_000512_060 Hb_001100_060 Hb_001100_060 Hb_055488_010--Hb_001100_060 Hb_004678_040 Hb_004678_040 Hb_055488_010--Hb_004678_040 Hb_000671_050 Hb_000671_050 Hb_055488_010--Hb_000671_050 Hb_000416_040 Hb_000416_040 Hb_055488_010--Hb_000416_040 Hb_029866_090 Hb_029866_090 Hb_001195_600--Hb_029866_090 Hb_008725_260 Hb_008725_260 Hb_001195_600--Hb_008725_260 Hb_000056_210 Hb_000056_210 Hb_001195_600--Hb_000056_210 Hb_000915_090 Hb_000915_090 Hb_001195_600--Hb_000915_090 Hb_002813_040 Hb_002813_040 Hb_001195_600--Hb_002813_040 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_001100_060--Hb_000671_050 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_002046_190 Hb_002046_190 Hb_001100_060--Hb_002046_190 Hb_000173_290 Hb_000173_290 Hb_001100_060--Hb_000173_290 Hb_001959_070 Hb_001959_070 Hb_001100_060--Hb_001959_070 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_004678_040--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_000671_050--Hb_000035_320 Hb_000976_410 Hb_000976_410 Hb_000671_050--Hb_000976_410 Hb_000876_070 Hb_000876_070 Hb_000671_050--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_000671_050--Hb_004724_080 Hb_000671_050--Hb_002105_040 Hb_002740_030 Hb_002740_030 Hb_000416_040--Hb_002740_030 Hb_000563_320 Hb_000563_320 Hb_000416_040--Hb_000563_320 Hb_001142_030 Hb_001142_030 Hb_000416_040--Hb_001142_030 Hb_002863_050 Hb_002863_050 Hb_000416_040--Hb_002863_050 Hb_001163_050 Hb_001163_050 Hb_000416_040--Hb_001163_050 Hb_036790_100 Hb_036790_100 Hb_000416_040--Hb_036790_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.74512 5.53811 4.62428 4.81695 3.56113 7.16375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88477 8.8454 10.2574 2.50547 5.03902

CAGE analysis