Hb_001959_070

Information

Type -
Description -
Location Contig1959: 88552-90656
Sequence    

Annotation

kegg
ID rcu:RCOM_1024110
description hypothetical protein
nr
ID XP_012077647.1
description PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KED5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12902 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19628: 88605-90608
cDNA
(Sanger)
(ID:Location)		 012_G11r.ab1: 90830-91201 , 022_M19r.ab1: 90882-91239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_070 0.0 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
2 Hb_001348_180 0.0752092014 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
3 Hb_000173_290 0.0882657319 - - guanylate kinase, putative [Ricinus communis]
4 Hb_001100_060 0.0904234005 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
5 Hb_002205_070 0.0918712899 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
6 Hb_004837_030 0.0923072751 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
7 Hb_000236_070 0.0940000534 - - conserved hypothetical protein [Ricinus communis]
8 Hb_111985_050 0.0962982529 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
9 Hb_003001_120 0.1003131143 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
10 Hb_001141_380 0.101527402 - - hypothetical protein PRUPE_ppa012823mg [Prunus persica]
11 Hb_000922_330 0.1024154876 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
12 Hb_000529_190 0.1033042044 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
13 Hb_118707_030 0.1042755415 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
14 Hb_011316_040 0.1045253553 - - peptidase, putative [Ricinus communis]
15 Hb_009694_010 0.1052241036 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003020_020 0.107540504 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
17 Hb_000345_390 0.1077166742 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
18 Hb_001959_080 0.1080933179 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000505_010 0.108892156 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
20 Hb_000316_050 0.1092272608 - - enoyl-ACP reductase [Vernicia fordii]

Gene co-expression network

sample Hb_001959_070 Hb_001959_070 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_000173_290 Hb_000173_290 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_002205_070 Hb_002205_070 Hb_001959_070--Hb_002205_070 Hb_004837_030 Hb_004837_030 Hb_001959_070--Hb_004837_030 Hb_000236_070 Hb_000236_070 Hb_001959_070--Hb_000236_070 Hb_001348_180--Hb_004837_030 Hb_163950_030 Hb_163950_030 Hb_001348_180--Hb_163950_030 Hb_001348_180--Hb_000173_290 Hb_004619_080 Hb_004619_080 Hb_001348_180--Hb_004619_080 Hb_007811_030 Hb_007811_030 Hb_001348_180--Hb_007811_030 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_000671_050 Hb_000671_050 Hb_001100_060--Hb_000671_050 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_002046_190 Hb_002046_190 Hb_001100_060--Hb_002046_190 Hb_001100_060--Hb_000173_290 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_009694_010 Hb_009694_010 Hb_004837_030--Hb_009694_010 Hb_004837_030--Hb_163950_030 Hb_007632_030 Hb_007632_030 Hb_004837_030--Hb_007632_030 Hb_028227_020 Hb_028227_020 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000236_070--Hb_000107_620 Hb_000648_110 Hb_000648_110 Hb_000236_070--Hb_000648_110 Hb_000236_070--Hb_009838_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3582 2.77308 5.7873 7.64644 11.5754 15.8087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9357 14.9032 11.327 3.33628 11.0969

CAGE analysis