Hb_007811_030

Information

Type -
Description -
Location Contig7811: 47493-50439
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08620g
description POPTRDRAFT_762363; hypothetical protein
nr
ID AIU41667.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LZ98
description ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1
trembl
ID A0A097P9U5
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI20 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter i family member 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57976: 47506-50672 , PASA_asmbl_57981: 51165-51378
cDNA
(Sanger)
(ID:Location)		 019_J08r.ab1: 50586-53271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007811_030 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000915_260 0.086671901 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
3 Hb_001971_010 0.0889257337 - - F23N19.4 [Arabidopsis thaliana]
4 Hb_008096_010 0.0893545358 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
5 Hb_000054_090 0.0941844677 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000173_290 0.098045539 - - guanylate kinase, putative [Ricinus communis]
7 Hb_001348_180 0.1010565468 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
8 Hb_002496_020 0.101664542 - - DNA binding protein, putative [Ricinus communis]
9 Hb_008748_040 0.1027305422 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
10 Hb_005847_060 0.1042382426 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
11 Hb_004369_020 0.1047081109 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
12 Hb_029879_070 0.1048282957 - - PREDICTED: phospholipase A I [Jatropha curcas]
13 Hb_004191_020 0.1052275688 - - PREDICTED: cysteine synthase [Jatropha curcas]
14 Hb_002835_240 0.1053434375 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
15 Hb_002600_090 0.1072429019 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002374_240 0.10746379 - - nucellin, putative [Ricinus communis]
17 Hb_000335_030 0.1085553612 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
18 Hb_001141_020 0.1087864795 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_002235_250 0.1093575338 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
20 Hb_000224_160 0.1093811913 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007811_030 Hb_007811_030 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_000173_290 Hb_000173_290 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_008096_010--Hb_002276_170 Hb_018133_040 Hb_018133_040 Hb_008096_010--Hb_018133_040 Hb_000236_240 Hb_000236_240 Hb_008096_010--Hb_000236_240 Hb_001632_040 Hb_001632_040 Hb_008096_010--Hb_001632_040 Hb_001019_190 Hb_001019_190 Hb_008096_010--Hb_001019_190 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_000054_090--Hb_001971_010 Hb_000054_090--Hb_000173_290 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_001959_070 Hb_001959_070 Hb_001348_180--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_001348_180--Hb_004837_030 Hb_163950_030 Hb_163950_030 Hb_001348_180--Hb_163950_030 Hb_001348_180--Hb_000173_290 Hb_004619_080 Hb_004619_080 Hb_001348_180--Hb_004619_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.31 14.674 51.199 61.7586 74.6231 57.2175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.894 60.9671 62.2185 43.845 83.7185

CAGE analysis