Hb_008096_010

Information

Type -
Description -
Location Contig8096: 7339-7945
Sequence    

Annotation

kegg
ID mtr:MTR_1g045660
description hypothetical protein
nr
ID XP_003590182.1
description hypothetical protein MTR_1g045660 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7I6P9
description Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g045660 PE=2 SV=1
Gene Ontology
ID GO:0016021
description hypothetical protein MTR_1g045660

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59192: 6902-10463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008096_010 0.0 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
2 Hb_007811_030 0.0893545358 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_002276_170 0.1003488119 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
4 Hb_018133_040 0.1013586371 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
5 Hb_000236_240 0.1015774171 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
6 Hb_001632_040 0.1024103192 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
7 Hb_001019_190 0.1061698052 - - conserved hypothetical protein [Ricinus communis]
8 Hb_032986_010 0.1062984477 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
9 Hb_002835_240 0.1119635552 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
10 Hb_001243_040 0.1122304076 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
11 Hb_002997_080 0.1123256544 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
12 Hb_075751_010 0.112441596 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
13 Hb_002749_090 0.1130681522 - - -
14 Hb_023344_120 0.1156602307 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
15 Hb_000173_290 0.1162107017 - - guanylate kinase, putative [Ricinus communis]
16 Hb_001696_010 0.1173022472 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
17 Hb_068804_100 0.1177728596 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
18 Hb_000915_260 0.1188802161 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
19 Hb_000883_020 0.1190652714 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
20 Hb_004369_020 0.119803223 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]

Gene co-expression network

sample Hb_008096_010 Hb_008096_010 Hb_007811_030 Hb_007811_030 Hb_008096_010--Hb_007811_030 Hb_002276_170 Hb_002276_170 Hb_008096_010--Hb_002276_170 Hb_018133_040 Hb_018133_040 Hb_008096_010--Hb_018133_040 Hb_000236_240 Hb_000236_240 Hb_008096_010--Hb_000236_240 Hb_001632_040 Hb_001632_040 Hb_008096_010--Hb_001632_040 Hb_001019_190 Hb_001019_190 Hb_008096_010--Hb_001019_190 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_000173_290 Hb_000173_290 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_000313_260 Hb_000313_260 Hb_002276_170--Hb_000313_260 Hb_002276_170--Hb_000915_260 Hb_001047_220 Hb_001047_220 Hb_002276_170--Hb_001047_220 Hb_000317_470 Hb_000317_470 Hb_002276_170--Hb_000317_470 Hb_002276_170--Hb_001632_040 Hb_004414_060 Hb_004414_060 Hb_002276_170--Hb_004414_060 Hb_001243_040 Hb_001243_040 Hb_018133_040--Hb_001243_040 Hb_018133_040--Hb_002276_170 Hb_114310_090 Hb_114310_090 Hb_018133_040--Hb_114310_090 Hb_001322_170 Hb_001322_170 Hb_018133_040--Hb_001322_170 Hb_018133_040--Hb_001632_040 Hb_000260_100 Hb_000260_100 Hb_000236_240--Hb_000260_100 Hb_001329_130 Hb_001329_130 Hb_000236_240--Hb_001329_130 Hb_002997_080 Hb_002997_080 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_001632_040--Hb_004414_060 Hb_001632_040--Hb_114310_090 Hb_001632_040--Hb_001243_040 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_000819_080 Hb_000819_080 Hb_001019_190--Hb_000819_080 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4124 4.75774 10.4362 10.833 18.5397 7.25469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3103 10.2532 14.3322 7.3125 12.4198

CAGE analysis