Hb_024570_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig24570: 5466-7939
Sequence    

Annotation

kegg
ID pop:POPTR_0018s04720g
description POPTRDRAFT_736814; hypothetical protein
nr
ID XP_012077337.1
description PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
swissprot
ID Q9M0G2
description Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1
trembl
ID A0A067KDD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07708 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger c-x8-c-x5-c-x3-h type family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25592: 5441-7007
cDNA
(Sanger)
(ID:Location)		 016_I05.ab1: 5444-6154 , 018_H01.ab1: 5449-5834 , 035_A11.ab1: 5444-6156 , 045_L07.ab1: 5441-6220 , 049_L24.ab1: 5441-6056

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024570_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
2 Hb_000739_310 0.0786179975 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
3 Hb_007545_030 0.0802455902 - - conserved hypothetical protein [Ricinus communis]
4 Hb_028089_010 0.0832375201 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
5 Hb_001019_190 0.0849969012 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002374_240 0.1009778922 - - nucellin, putative [Ricinus communis]
7 Hb_000819_080 0.1045487053 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_002095_010 0.105952314 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
9 Hb_001141_020 0.1067771865 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
10 Hb_000796_220 0.1081622319 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
11 Hb_073171_040 0.1088122276 - - malic enzyme, putative [Ricinus communis]
12 Hb_004225_050 0.10989153 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_188063_020 0.1114691166 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002909_050 0.1118747133 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002276_170 0.1118871087 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
16 Hb_002685_210 0.1126666632 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_001696_010 0.1130540725 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
18 Hb_000200_030 0.113257056 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
19 Hb_001243_040 0.1133057528 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
20 Hb_010710_070 0.1135863057 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_024570_010 Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_024570_010--Hb_000739_310 Hb_007545_030 Hb_007545_030 Hb_024570_010--Hb_007545_030 Hb_028089_010 Hb_028089_010 Hb_024570_010--Hb_028089_010 Hb_001019_190 Hb_001019_190 Hb_024570_010--Hb_001019_190 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_000819_080 Hb_000819_080 Hb_024570_010--Hb_000819_080 Hb_000707_050 Hb_000707_050 Hb_000739_310--Hb_000707_050 Hb_000832_020 Hb_000832_020 Hb_000739_310--Hb_000832_020 Hb_000739_310--Hb_007545_030 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_000739_310--Hb_001019_190 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_007545_030--Hb_001019_190 Hb_007545_030--Hb_028089_010 Hb_000032_100 Hb_000032_100 Hb_007545_030--Hb_000032_100 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_001019_190--Hb_000819_080 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_000184_170 Hb_000184_170 Hb_002374_240--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_003939_050 Hb_003939_050 Hb_000819_080--Hb_003939_050 Hb_000819_080--Hb_002681_070 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1383 24.8254 44.7314 31.6494 89.6946 78.0809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.1672 35.5376 105.683 46.3992 82.9064

CAGE analysis