Hb_000707_050

Information

Type -
Description -
Location Contig707: 62566-63505
Sequence    

Annotation

kegg
ID pmum:103338705
description uncharacterized LOC103338705
nr
ID XP_012087981.1
description PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
swissprot
ID O80792
description Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=3 SV=1
trembl
ID A0A067JKW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25101 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_050 0.0 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
2 Hb_000739_310 0.0724330551 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
3 Hb_086639_040 0.0743888964 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
4 Hb_000574_390 0.0749959031 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
5 Hb_000832_020 0.0754170117 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
6 Hb_006711_100 0.0846634855 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
7 Hb_013405_030 0.0851495241 - - conserved hypothetical protein [Ricinus communis]
8 Hb_044728_010 0.0871268843 - - -
9 Hb_000796_220 0.0874288459 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
10 Hb_012799_030 0.0913596767 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
11 Hb_001318_270 0.0913659098 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
12 Hb_002942_100 0.0917837972 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
13 Hb_009767_110 0.0921972487 - - -
14 Hb_006649_050 0.0929819511 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
15 Hb_000352_190 0.0932799609 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
16 Hb_000047_030 0.0938700528 - - tfiif-alpha, putative [Ricinus communis]
17 Hb_004225_050 0.0939449369 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
18 Hb_001019_190 0.0956543013 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001675_180 0.0969011169 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_002217_300 0.0975810399 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]

Gene co-expression network

sample Hb_000707_050 Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000707_050--Hb_000739_310 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_000832_020 Hb_000832_020 Hb_000707_050--Hb_000832_020 Hb_006711_100 Hb_006711_100 Hb_000707_050--Hb_006711_100 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030 Hb_000739_310--Hb_000832_020 Hb_007545_030 Hb_007545_030 Hb_000739_310--Hb_007545_030 Hb_024570_010 Hb_024570_010 Hb_000739_310--Hb_024570_010 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_001019_190 Hb_001019_190 Hb_000739_310--Hb_001019_190 Hb_086639_040--Hb_000574_390 Hb_000631_080 Hb_000631_080 Hb_086639_040--Hb_000631_080 Hb_005496_130 Hb_005496_130 Hb_086639_040--Hb_005496_130 Hb_003688_150 Hb_003688_150 Hb_086639_040--Hb_003688_150 Hb_103118_010 Hb_103118_010 Hb_086639_040--Hb_103118_010 Hb_000574_390--Hb_013405_030 Hb_015198_020 Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000574_390--Hb_000631_080 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220 Hb_012799_030 Hb_012799_030 Hb_006711_100--Hb_012799_030 Hb_004225_050 Hb_004225_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_000883_060 Hb_000883_060 Hb_006711_100--Hb_000883_060 Hb_000352_190 Hb_000352_190 Hb_006711_100--Hb_000352_190 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_013405_030--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14611 2.19014 1.25258 1.73131 4.127 3.99768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45143 3.6145 5.96596 3.15254 4.09148

CAGE analysis