Hb_013405_030

Information

Type -
Description -
Location Contig13405: 16502-17630
Sequence    

Annotation

kegg
ID rcu:RCOM_1582560
description hypothetical protein
nr
ID XP_002513657.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09644: 15077-17999 , PASA_asmbl_09645: 15228-16081 , PASA_asmbl_09646: 16154-16636
cDNA
(Sanger)
(ID:Location)		 016_J14.ab1: 15103-17164 , 030_D09.ab1: 15103-17159 , 030_K18.ab1: 15109-17229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000574_390 0.0652297477 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
3 Hb_001975_160 0.0690598274 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002518_140 0.0760342244 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
5 Hb_000047_030 0.0824149985 - - tfiif-alpha, putative [Ricinus communis]
6 Hb_001507_020 0.0845708415 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
7 Hb_015198_020 0.084978055 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000707_050 0.0851495241 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
9 Hb_003142_020 0.0899653345 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
10 Hb_007632_220 0.0928936793 - - RNA-binding protein, putative [Ricinus communis]
11 Hb_000317_020 0.0932791818 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
12 Hb_002888_030 0.0966915526 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_010172_050 0.0973092587 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
14 Hb_000258_270 0.0974039114 - - PREDICTED: cullin-3A [Jatropha curcas]
15 Hb_001318_270 0.0986141243 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
16 Hb_006915_050 0.0990768264 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
17 Hb_002725_120 0.0997303673 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
18 Hb_001007_060 0.1006054093 - - Transcriptional corepressor SEUSS [Glycine soja]
19 Hb_017358_030 0.100834438 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
20 Hb_011242_040 0.1009544728 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_013405_030 Hb_013405_030 Hb_000574_390 Hb_000574_390 Hb_013405_030--Hb_000574_390 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_015198_020 Hb_015198_020 Hb_013405_030--Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_001975_160--Hb_001507_020 Hb_000317_020 Hb_000317_020 Hb_001975_160--Hb_000317_020 Hb_000776_110 Hb_000776_110 Hb_001975_160--Hb_000776_110 Hb_007757_110 Hb_007757_110 Hb_001975_160--Hb_007757_110 Hb_000152_820 Hb_000152_820 Hb_001975_160--Hb_000152_820 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_000047_030--Hb_015198_020 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_002678_020 Hb_002678_020 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_001507_020--Hb_007757_110 Hb_015198_020--Hb_011242_040 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.771 91.2121 48.38 55.4944 149.297 118.856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.268 136.346 246.671 79.8487 130.618

CAGE analysis