Hb_000047_030

Information

Type -
Description -
Location Contig47: 155295-168799
Sequence    

Annotation

kegg
ID rcu:RCOM_1299530
description tfiif-alpha, putative
nr
ID XP_002519387.1
description tfiif-alpha, putative [Ricinus communis]
swissprot
ID Q9SU25
description Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1
trembl
ID B9S068
description Tfiif-alpha, putative OS=Ricinus communis GN=RCOM_1299530 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor iif subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44202: 156667-164891 , PASA_asmbl_44203: 165247-167408 , PASA_asmbl_44204: 167651-168861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000047_030 0.0 - - tfiif-alpha, putative [Ricinus communis]
2 Hb_015198_020 0.0725152089 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000574_390 0.0757922954 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
4 Hb_000928_210 0.0802181879 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
5 Hb_013405_030 0.0824149985 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004724_080 0.0842984553 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001140_220 0.0859980204 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000258_270 0.0860955553 - - PREDICTED: cullin-3A [Jatropha curcas]
9 Hb_007632_220 0.0865691372 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_000836_040 0.087063841 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_007317_200 0.0883724209 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003053_020 0.0888635364 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_001898_160 0.089368849 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
14 Hb_011242_040 0.0898851263 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_000206_210 0.0908705321 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
16 Hb_000783_020 0.0924437689 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
17 Hb_000707_050 0.0938700528 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
18 Hb_002685_210 0.0963304417 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_001318_270 0.0963659387 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
20 Hb_005162_070 0.096759117 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000047_030 Hb_000047_030 Hb_015198_020 Hb_015198_020 Hb_000047_030--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_013405_030 Hb_013405_030 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_015198_020--Hb_000574_390 Hb_011242_040 Hb_011242_040 Hb_015198_020--Hb_011242_040 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160 Hb_000574_390--Hb_013405_030 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_000876_070 Hb_000876_070 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_000928_210--Hb_004724_080 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_004724_080--Hb_000876_070 Hb_002105_040 Hb_002105_040 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_000567_120 Hb_000567_120 Hb_001140_220--Hb_000567_120 Hb_001140_220--Hb_011242_040 Hb_002235_280 Hb_002235_280 Hb_001140_220--Hb_002235_280 Hb_000258_270 Hb_000258_270 Hb_001140_220--Hb_000258_270 Hb_008695_100 Hb_008695_100 Hb_001140_220--Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_001140_220--Hb_000723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.967 11.0466 11.7713 14.1846 21.6095 24.9952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1699 30.0202 51.0617 15.1732 27.7201

CAGE analysis