Hb_001140_220

Information

Type -
Description -
Location Contig1140: 244830-246269
Sequence    

Annotation

kegg
ID rcu:RCOM_1495990
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002510791.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q7X6A5
description Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
trembl
ID B9R9B6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1495990 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g60050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04202: 244516-244877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_220 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000567_120 0.0705094599 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
3 Hb_011242_040 0.0746326406 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_002235_280 0.0769272826 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
5 Hb_000258_270 0.0788370931 - - PREDICTED: cullin-3A [Jatropha curcas]
6 Hb_008695_100 0.0799551592 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
7 Hb_000723_080 0.0804903701 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_005162_070 0.0813714601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000047_030 0.0859980204 - - tfiif-alpha, putative [Ricinus communis]
10 Hb_013607_040 0.0873221567 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
11 Hb_016901_010 0.0881804756 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
12 Hb_004846_070 0.0898089812 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
13 Hb_003053_020 0.0898364975 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_172932_010 0.0904216825 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_005289_030 0.0936817775 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
16 Hb_019263_020 0.0998329513 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
17 Hb_000976_410 0.1003713722 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_000928_210 0.1004394685 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
19 Hb_011534_030 0.1008791451 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
20 Hb_006117_070 0.1010470974 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_220 Hb_001140_220 Hb_000567_120 Hb_000567_120 Hb_001140_220--Hb_000567_120 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_002235_280 Hb_002235_280 Hb_001140_220--Hb_002235_280 Hb_000258_270 Hb_000258_270 Hb_001140_220--Hb_000258_270 Hb_008695_100 Hb_008695_100 Hb_001140_220--Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_001140_220--Hb_000723_080 Hb_000567_120--Hb_008695_100 Hb_000567_120--Hb_000723_080 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_011242_040--Hb_000258_270 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_002235_280--Hb_008695_100 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040 Hb_004052_090 Hb_004052_090 Hb_000258_270--Hb_004052_090 Hb_000836_040 Hb_000836_040 Hb_000258_270--Hb_000836_040 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_008695_100--Hb_000723_080 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_008695_100--Hb_000617_150 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_000723_080--Hb_016901_010 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60701 1.75509 0.861923 2.29162 1.92047 3.90789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66649 5.22809 7.14976 2.32462 3.38843

CAGE analysis