Hb_000836_040

Information

Type -
Description -
Location Contig836: 47811-58302
Sequence    

Annotation

kegg
ID rcu:RCOM_1616010
description hypothetical protein
nr
ID XP_012083354.1
description PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14376 PE=4 SV=1
Gene Ontology
ID GO:0005488
description at-rich interactive domain-containing protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59913: 48612-57401 , PASA_asmbl_59914: 57882-58272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_040 0.0 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_000258_270 0.0675246556 - - PREDICTED: cullin-3A [Jatropha curcas]
3 Hb_030565_030 0.0678816884 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_004724_080 0.0762804733 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000003_250 0.0848572916 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_004052_090 0.0857622672 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
7 Hb_000047_030 0.087063841 - - tfiif-alpha, putative [Ricinus communis]
8 Hb_005463_100 0.0895545183 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
9 Hb_000913_020 0.0897137126 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_164010_030 0.0900778676 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
11 Hb_002046_180 0.0950398525 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
12 Hb_002620_020 0.0956854957 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
13 Hb_000041_100 0.0962750396 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
14 Hb_020805_130 0.0967868874 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_000066_080 0.0968229815 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
16 Hb_002725_120 0.0982728463 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
17 Hb_001959_190 0.0988239123 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
18 Hb_000783_020 0.0992203371 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
19 Hb_008695_100 0.1003129607 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
20 Hb_007317_200 0.1006489719 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_040 Hb_000836_040 Hb_000258_270 Hb_000258_270 Hb_000836_040--Hb_000258_270 Hb_030565_030 Hb_030565_030 Hb_000836_040--Hb_030565_030 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000003_250 Hb_000003_250 Hb_000836_040--Hb_000003_250 Hb_004052_090 Hb_004052_090 Hb_000836_040--Hb_004052_090 Hb_000047_030 Hb_000047_030 Hb_000836_040--Hb_000047_030 Hb_000258_270--Hb_004052_090 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_005188_020 Hb_005188_020 Hb_030565_030--Hb_005188_020 Hb_020805_130 Hb_020805_130 Hb_030565_030--Hb_020805_130 Hb_000230_500 Hb_000230_500 Hb_030565_030--Hb_000230_500 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_030565_030--Hb_009803_050 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_000876_070 Hb_000876_070 Hb_004724_080--Hb_000876_070 Hb_002105_040 Hb_002105_040 Hb_004724_080--Hb_002105_040 Hb_004724_080--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000206_240 Hb_000206_240 Hb_004052_090--Hb_000206_240 Hb_007483_100 Hb_007483_100 Hb_004052_090--Hb_007483_100 Hb_003371_090 Hb_003371_090 Hb_004052_090--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_004052_090--Hb_002218_010 Hb_015198_020 Hb_015198_020 Hb_000047_030--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_000047_030--Hb_000574_390 Hb_000047_030--Hb_000928_210 Hb_013405_030 Hb_013405_030 Hb_000047_030--Hb_013405_030 Hb_000047_030--Hb_004724_080 Hb_000047_030--Hb_001140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.362 8.42514 5.44592 9.40591 7.09509 9.62121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.79791 13.063 21.2418 5.37784 12.1785

CAGE analysis