Hb_005188_020

Information

Type -
Description -
Location Contig5188: 11036-13717
Sequence    

Annotation

kegg
ID rcu:RCOM_0095330
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088086.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
swissprot
ID Q9FWA6
description Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
trembl
ID B9T5G9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0095330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46617: 12914-13411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005188_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
2 Hb_000230_500 0.0655908362 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
3 Hb_030565_030 0.066921188 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_000041_100 0.086125132 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
5 Hb_004374_070 0.0869212881 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
6 Hb_001318_270 0.0871753285 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
7 Hb_003371_090 0.088415691 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
8 Hb_000352_270 0.0934029069 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
9 Hb_012325_020 0.0949844984 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
10 Hb_003020_220 0.095024087 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
11 Hb_006718_020 0.0965626999 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
12 Hb_002988_040 0.0976162443 - - -
13 Hb_009803_050 0.0988459449 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_000367_260 0.0997241999 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
15 Hb_002316_150 0.1000910193 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
16 Hb_013607_040 0.1002410565 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
17 Hb_002878_020 0.1003493202 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_001959_190 0.1025937128 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
19 Hb_000836_040 0.1040226139 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_020805_130 0.1069480046 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_005188_020 Hb_005188_020 Hb_000230_500 Hb_000230_500 Hb_005188_020--Hb_000230_500 Hb_030565_030 Hb_030565_030 Hb_005188_020--Hb_030565_030 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090 Hb_000230_500--Hb_000041_100 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_020805_130 Hb_020805_130 Hb_030565_030--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_030565_030--Hb_009803_050 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_004374_070--Hb_000041_100 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.973197 1.48934 0.766733 0.630146 0.668177 0.925071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.949712 1.70082 2.68119 0.951235 1.45382

CAGE analysis