Hb_020805_130

Information

Type -
Description -
Location Contig20805: 105616-109551
Sequence    

Annotation

kegg
ID rcu:RCOM_1601680
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002510702.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID P93006
description Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1
trembl
ID B9R8Q9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1601680 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21528: 105756-109458 , PASA_asmbl_21529: 105726-106051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_130 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001959_190 0.0577310284 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
3 Hb_001507_040 0.059251378 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009803_050 0.0696190031 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_003053_020 0.0775679648 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
6 Hb_000603_080 0.077767139 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
7 Hb_002027_040 0.0789214008 - - synapse-associated protein, putative [Ricinus communis]
8 Hb_030565_030 0.0799359307 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
9 Hb_001902_140 0.0803209862 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
10 Hb_005463_100 0.0809467411 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
11 Hb_000445_040 0.0816204655 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
12 Hb_008616_070 0.0831414292 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
13 Hb_001014_030 0.0839346265 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000783_020 0.0843731898 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
15 Hb_000373_130 0.084785156 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_000120_960 0.0850087381 - - isocitrate dehydrogenase, putative [Ricinus communis]
17 Hb_003371_090 0.085882636 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
18 Hb_001314_070 0.0859278541 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001633_210 0.0862241755 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
20 Hb_002660_070 0.0862994986 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]

Gene co-expression network

sample Hb_020805_130 Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_001959_190--Hb_009803_050 Hb_001959_190--Hb_001507_040 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_009803_050--Hb_000603_080 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_003053_020--Hb_003697_040 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2091 15.9609 11.2577 16.6805 12.7184 12.4627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2095 26.1637 40.9543 17.0932 17.5608

CAGE analysis