Hb_007904_260

Information

Type -
Description -
Location Contig7904: 158022-159109
Sequence    

Annotation

kegg
ID rcu:RCOM_1507830
description hypothetical protein
nr
ID XP_012085549.1
description PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D6BRE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17870 PE=2 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105644715

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58343: 158015-158988
cDNA
(Sanger)
(ID:Location)		 030_N10.ab1: 158088-158866 , 043_B14.ab1: 158135-158986 , 051_D19.ab1: 158015-158991

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_260 0.0 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
2 Hb_000046_320 0.0624311283 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_003053_020 0.0727898645 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
4 Hb_001512_030 0.0738330582 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
5 Hb_006117_070 0.0833050736 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
6 Hb_003697_040 0.0835676581 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
7 Hb_000638_250 0.0840349591 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000703_350 0.084899975 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_119600_070 0.0854226057 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
10 Hb_010883_050 0.0866276627 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
11 Hb_000140_050 0.0873976096 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
12 Hb_001140_060 0.0876439634 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
13 Hb_000985_030 0.0882182075 - - PREDICTED: RRP15-like protein [Populus euphratica]
14 Hb_000240_090 0.0884223449 - - Rab5 [Hevea brasiliensis]
15 Hb_029879_130 0.0888569917 - - Derlin-2, putative [Ricinus communis]
16 Hb_003540_030 0.089175991 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
17 Hb_000103_320 0.0892277834 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_004254_120 0.0892454848 - - conserved hypothetical protein [Ricinus communis]
19 Hb_158467_010 0.0896703919 - - transporter, putative [Ricinus communis]
20 Hb_002799_110 0.0909490373 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_260 Hb_007904_260 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000749_220 Hb_000749_220 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003053_020--Hb_003697_040 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_003053_020--Hb_000985_030 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030 Hb_000505_040 Hb_000505_040 Hb_001512_030--Hb_000505_040 Hb_001633_050 Hb_001633_050 Hb_001512_030--Hb_001633_050 Hb_001512_030--Hb_000985_030 Hb_003605_090 Hb_003605_090 Hb_001512_030--Hb_003605_090 Hb_004889_010 Hb_004889_010 Hb_001512_030--Hb_004889_010 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003697_040--Hb_003605_090 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_003697_040--Hb_004889_010 Hb_003697_040--Hb_000783_020 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.276 5.94884 11.61 15.2014 11.0637 16.9331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2374 26.4074 32.2066 11.3398 14.0526

CAGE analysis