Hb_007044_120

Information

Type -
Description -
Location Contig7044: 98187-100616
Sequence    

Annotation

kegg
ID rcu:RCOM_0597000
description cytochrome B561, putative
nr
ID XP_012077929.1
description PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
swissprot
ID Q9SWS1
description Probable transmembrane ascorbate ferrireductase 2 OS=Arabidopsis thaliana GN=CYB561B PE=1 SV=1
trembl
ID A0A067K9L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12957 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable transmembrane ascorbate ferrireductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55025: 98305-100600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_120 0.0 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
2 Hb_021596_090 0.0652179263 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
3 Hb_000638_250 0.0662758692 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000403_060 0.0796977907 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
5 Hb_148121_040 0.0847349296 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_000175_340 0.0854928148 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
7 Hb_000120_960 0.0857145445 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_000236_040 0.0868709614 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
9 Hb_002995_020 0.087222568 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
10 Hb_000103_320 0.0877583902 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_021068_040 0.0884066852 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
12 Hb_048476_110 0.0886147435 - - PREDICTED: adagio protein 3 [Jatropha curcas]
13 Hb_000059_360 0.0898062421 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
14 Hb_000046_100 0.0905994307 - - NADH dehydrogenase, putative [Ricinus communis]
15 Hb_004109_170 0.0920175337 - - PREDICTED: probable ribokinase [Jatropha curcas]
16 Hb_000155_200 0.0924005355 - - Rab7 [Hevea brasiliensis]
17 Hb_000205_090 0.0929979522 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
18 Hb_118419_010 0.0931711615 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_000580_090 0.094017635 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
20 Hb_000086_280 0.0950981429 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]

Gene co-expression network

sample Hb_007044_120 Hb_007044_120 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_000638_250 Hb_000638_250 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_000046_100 Hb_000046_100 Hb_021596_090--Hb_000046_100 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_000103_320 Hb_000103_320 Hb_021596_090--Hb_000103_320 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000403_060--Hb_000638_250 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_148121_040--Hb_000638_250 Hb_148121_040--Hb_004696_080 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_026889_030 Hb_026889_030 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.782 11.0114 26.8989 20.8864 16.8391 14.1038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8992 38.7142 41.7901 15.9673 8.61871

CAGE analysis