Hb_003813_030

Information

Type -
Description -
Location Contig3813: 10751-14717
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09820g
description POPTRDRAFT_758948; DARK INDUCIBLE 9 family protein
nr
ID XP_012077987.1
description PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
swissprot
ID Q9M884
description Mannose-6-phosphate isomerase 1 OS=Arabidopsis thaliana GN=PMI1 PE=1 SV=1
trembl
ID A0A067KMB9
description Mannose-6-phosphate isomerase OS=Jatropha curcas GN=JCGZ_12990 PE=3 SV=1
Gene Ontology
ID GO:0004476
description mannose-6-phosphate isomerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38620: 10843-12680 , PASA_asmbl_38621: 12695-14248 , PASA_asmbl_38622: 14281-14418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_030 0.0 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
2 Hb_000580_090 0.0642845984 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
3 Hb_000827_050 0.0699987596 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_004109_170 0.07526638 - - PREDICTED: probable ribokinase [Jatropha curcas]
5 Hb_000236_040 0.0797997702 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
6 Hb_000175_340 0.0804175786 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
7 Hb_048476_110 0.0813327392 - - PREDICTED: adagio protein 3 [Jatropha curcas]
8 Hb_050514_010 0.0820922672 - - hypothetical protein 29 [Hevea brasiliensis]
9 Hb_011519_010 0.0870304001 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
10 Hb_000260_030 0.0873164049 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_001633_050 0.0874989476 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
12 Hb_005539_280 0.0875801209 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
13 Hb_004058_030 0.0876294028 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
14 Hb_032264_070 0.0878472853 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
15 Hb_004410_080 0.0880842086 - - cellular nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000205_090 0.090166092 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
17 Hb_000656_240 0.0912003601 - - proteasome subunit alpha type, putative [Ricinus communis]
18 Hb_000768_090 0.0917881314 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
19 Hb_000504_140 0.0924950505 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
20 Hb_000777_040 0.0931782088 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_003813_030 Hb_003813_030 Hb_000580_090 Hb_000580_090 Hb_003813_030--Hb_000580_090 Hb_000827_050 Hb_000827_050 Hb_003813_030--Hb_000827_050 Hb_004109_170 Hb_004109_170 Hb_003813_030--Hb_004109_170 Hb_000236_040 Hb_000236_040 Hb_003813_030--Hb_000236_040 Hb_000175_340 Hb_000175_340 Hb_003813_030--Hb_000175_340 Hb_048476_110 Hb_048476_110 Hb_003813_030--Hb_048476_110 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000656_240 Hb_000656_240 Hb_000580_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000580_090--Hb_004116_190 Hb_000815_320 Hb_000815_320 Hb_000580_090--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_000580_090--Hb_001105_030 Hb_000827_050--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_000403_060 Hb_000403_060 Hb_000175_340--Hb_000403_060 Hb_000175_340--Hb_050514_010 Hb_026889_030 Hb_026889_030 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_007044_120 Hb_007044_120 Hb_000175_340--Hb_007044_120 Hb_000059_360 Hb_000059_360 Hb_048476_110--Hb_000059_360 Hb_000000_210 Hb_000000_210 Hb_048476_110--Hb_000000_210 Hb_048476_110--Hb_007044_120 Hb_001277_070 Hb_001277_070 Hb_048476_110--Hb_001277_070 Hb_048476_110--Hb_000580_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.13189 3.35613 8.53427 4.00295 6.87798 5.42648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76714 11.1325 11.2304 5.26961 4.14369

CAGE analysis