Hb_000059_360

Information

Type -
Description -
Location Contig59: 318137-322810
Sequence    

Annotation

kegg
ID rcu:RCOM_1502640
description hypothetical protein
nr
ID XP_012090525.1
description PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
swissprot
ID Q3ZBE6
description Transmembrane protein 135 OS=Bos taurus GN=TMEM135 PE=2 SV=1
trembl
ID A0A067JF66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26323 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50186: 318477-319167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_360 0.0 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
2 Hb_048476_110 0.069259525 - - PREDICTED: adagio protein 3 [Jatropha curcas]
3 Hb_007044_120 0.0898062421 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
4 Hb_002374_100 0.0993973185 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
5 Hb_003207_190 0.0998055298 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
6 Hb_001221_210 0.1028296419 - - thiF family protein [Populus trichocarpa]
7 Hb_003813_030 0.1050631657 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
8 Hb_021596_090 0.1058630793 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
9 Hb_000836_450 0.111224901 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
10 Hb_002995_020 0.1137901541 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
11 Hb_003077_040 0.1138470274 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
12 Hb_000236_040 0.1145232679 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
13 Hb_157022_010 0.1146809114 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
14 Hb_001199_050 0.1154724514 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
15 Hb_000976_430 0.1157594475 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
16 Hb_000261_080 0.1162040776 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
17 Hb_000046_100 0.1176817969 - - NADH dehydrogenase, putative [Ricinus communis]
18 Hb_000771_120 0.1179429793 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
19 Hb_002163_020 0.1194069583 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
20 Hb_000638_250 0.1207000384 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000059_360 Hb_000059_360 Hb_048476_110 Hb_048476_110 Hb_000059_360--Hb_048476_110 Hb_007044_120 Hb_007044_120 Hb_000059_360--Hb_007044_120 Hb_002374_100 Hb_002374_100 Hb_000059_360--Hb_002374_100 Hb_003207_190 Hb_003207_190 Hb_000059_360--Hb_003207_190 Hb_001221_210 Hb_001221_210 Hb_000059_360--Hb_001221_210 Hb_003813_030 Hb_003813_030 Hb_000059_360--Hb_003813_030 Hb_048476_110--Hb_003813_030 Hb_000000_210 Hb_000000_210 Hb_048476_110--Hb_000000_210 Hb_048476_110--Hb_007044_120 Hb_001277_070 Hb_001277_070 Hb_048476_110--Hb_001277_070 Hb_000580_090 Hb_000580_090 Hb_048476_110--Hb_000580_090 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_000638_250 Hb_000638_250 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_000976_430 Hb_000976_430 Hb_002374_100--Hb_000976_430 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_153112_020 Hb_153112_020 Hb_003207_190--Hb_153112_020 Hb_000671_090 Hb_000671_090 Hb_003207_190--Hb_000671_090 Hb_011224_110 Hb_011224_110 Hb_003207_190--Hb_011224_110 Hb_002284_010 Hb_002284_010 Hb_003207_190--Hb_002284_010 Hb_000331_080 Hb_000331_080 Hb_003207_190--Hb_000331_080 Hb_000834_270 Hb_000834_270 Hb_003207_190--Hb_000834_270 Hb_001633_050 Hb_001633_050 Hb_001221_210--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_001221_210--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_001221_210--Hb_000020_060 Hb_004116_190 Hb_004116_190 Hb_001221_210--Hb_004116_190 Hb_000329_200 Hb_000329_200 Hb_001221_210--Hb_000329_200 Hb_001504_110 Hb_001504_110 Hb_001221_210--Hb_001504_110 Hb_003813_030--Hb_000580_090 Hb_000827_050 Hb_000827_050 Hb_003813_030--Hb_000827_050 Hb_004109_170 Hb_004109_170 Hb_003813_030--Hb_004109_170 Hb_000236_040 Hb_000236_040 Hb_003813_030--Hb_000236_040 Hb_003813_030--Hb_000175_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52099 1.78114 5.47314 1.82776 2.89897 3.35956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94262 6.66619 8.27841 3.64062 1.48539

CAGE analysis