Hb_001014_040

Information

Type -
Description -
Location Contig1014: 44910-47207
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16160g
description POPTRDRAFT_646970; hypothetical protein
nr
ID XP_012088722.1
description PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00689: 44872-46927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_040 0.0 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
2 Hb_000108_070 0.0772003177 - - alpha-tubulin 1 [Hevea brasiliensis]
3 Hb_001811_030 0.0792849619 - - Beta-ureidopropionase, putative [Ricinus communis]
4 Hb_031862_110 0.0833718884 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_002005_020 0.0855503191 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002374_100 0.0857813143 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
7 Hb_000130_050 0.0887957021 - - 14-3-3 protein, putative [Ricinus communis]
8 Hb_008616_070 0.0898952912 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
9 Hb_006711_060 0.091438338 - - Tubulin beta-1 chain [Morus notabilis]
10 Hb_004079_030 0.0926108197 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
11 Hb_010422_060 0.0957771714 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
12 Hb_001507_040 0.0982762066 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004738_040 0.099566303 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
14 Hb_000445_040 0.1002187984 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
15 Hb_002660_070 0.1006391665 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
16 Hb_003540_030 0.1007670663 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
17 Hb_007765_020 0.1007747496 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
18 Hb_000096_010 0.1009080249 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
19 Hb_000334_150 0.1015121992 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000538_070 0.1040996452 - - PREDICTED: coatomer subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_001014_040 Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_000922_390 Hb_000922_390 Hb_001811_030--Hb_000922_390 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_001811_030--Hb_008616_070 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_000976_430 Hb_000976_430 Hb_002374_100--Hb_000976_430 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_000096_010 Hb_000096_010 Hb_000130_050--Hb_000096_010 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6622 4.69499 8.91859 9.61958 8.88397 11.0214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4762 14.6934 30.5025 12.2093 5.80946

CAGE analysis