Hb_000431_010

Information

Type -
Description -
Location Contig431: 11777-27776
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05340g
description POPTRDRAFT_1103181; hypothetical protein
nr
ID XP_002323308.2
description hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
swissprot
ID Q8LG50
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=2
trembl
ID B9II53
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05340g PE=4 SV=2
Gene Ontology
ID GO:0003676
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42206: 11798-27567 , PASA_asmbl_42208: 11830-27514 , PASA_asmbl_42209: 15594-15735 , PASA_asmbl_42210: 27724-28209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_010 0.0 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
2 Hb_002687_110 0.0592768 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
3 Hb_031862_110 0.0638552822 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_009486_130 0.0673232521 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
5 Hb_008300_010 0.0756138336 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
6 Hb_001277_330 0.0824214704 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
7 Hb_001140_060 0.0827051295 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
8 Hb_003632_010 0.0830613383 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009666_040 0.0830665878 - - glutathione transferase, putative [Ricinus communis]
10 Hb_004738_040 0.0849683361 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
11 Hb_006117_070 0.0865343779 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
12 Hb_011316_040 0.0870484618 - - peptidase, putative [Ricinus communis]
13 Hb_000753_130 0.0886236775 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
14 Hb_000240_090 0.0895762863 - - Rab5 [Hevea brasiliensis]
15 Hb_158467_010 0.0902648539 - - transporter, putative [Ricinus communis]
16 Hb_032264_110 0.0929638201 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
17 Hb_153112_020 0.0930979961 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
18 Hb_000115_330 0.0941748868 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_000648_110 0.0956522001 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
20 Hb_007904_260 0.0962917651 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]

Gene co-expression network

sample Hb_000431_010 Hb_000431_010 Hb_002687_110 Hb_002687_110 Hb_000431_010--Hb_002687_110 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_009486_130 Hb_009486_130 Hb_000431_010--Hb_009486_130 Hb_008300_010 Hb_008300_010 Hb_000431_010--Hb_008300_010 Hb_001277_330 Hb_001277_330 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_000115_330 Hb_000115_330 Hb_009486_130--Hb_000115_330 Hb_016065_010 Hb_016065_010 Hb_009486_130--Hb_016065_010 Hb_009486_130--Hb_008300_010 Hb_000205_270 Hb_000205_270 Hb_009486_130--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_009486_130--Hb_005488_010 Hb_008300_010--Hb_001140_060 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.1659 13.4262 29.1863 38.4537 60.1557 65.2759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.8478 105.47 142.689 36.0946 35.9428

CAGE analysis