Hb_002056_060

Information

Type -
Description -
Location Contig2056: 74462-75751
Sequence    

Annotation

kegg
ID rcu:RCOM_0481340
description Protein kinase APK1A, chloroplast precursor, putative
nr
ID XP_002530930.1
description Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID B9SY61
description Protein kinase APK1A, chloroplast, putative OS=Ricinus communis GN=RCOM_0481340 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21204: 74730-74911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_060 0.0 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
2 Hb_004993_050 0.0721193581 - - -
3 Hb_007943_090 0.0811826683 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
4 Hb_000125_030 0.0829365449 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
5 Hb_000072_080 0.084094864 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
6 Hb_000120_680 0.0854935323 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
7 Hb_005431_010 0.0863794918 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
8 Hb_000193_290 0.0869794426 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
9 Hb_000503_050 0.087473384 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
10 Hb_012675_060 0.0878451782 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
11 Hb_021409_030 0.0885240831 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
12 Hb_021409_160 0.0889713104 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
13 Hb_000240_090 0.0899820853 - - Rab5 [Hevea brasiliensis]
14 Hb_000009_160 0.0902009967 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
15 Hb_000377_060 0.0909611667 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_031862_110 0.0910379925 - - calcium-dependent protein kinase [Hevea brasiliensis]
17 Hb_000167_140 0.0922888522 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_000146_020 0.09280308 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_055062_030 0.0930797066 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
20 Hb_000347_410 0.0931819173 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002056_060 Hb_002056_060 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_016901_010 Hb_016901_010 Hb_004993_050--Hb_016901_010 Hb_001158_140 Hb_001158_140 Hb_004993_050--Hb_001158_140 Hb_006816_140 Hb_006816_140 Hb_004993_050--Hb_006816_140 Hb_005463_040 Hb_005463_040 Hb_004993_050--Hb_005463_040 Hb_001699_130 Hb_001699_130 Hb_004993_050--Hb_001699_130 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_004586_320 Hb_004586_320 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_012753_160 Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000072_080--Hb_000120_680 Hb_000617_150 Hb_000617_150 Hb_000120_680--Hb_000617_150 Hb_000240_090 Hb_000240_090 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_001105_070 Hb_001105_070 Hb_005431_010--Hb_001105_070 Hb_005431_010--Hb_000009_160 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_009773_020 Hb_009773_020 Hb_005431_010--Hb_009773_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.11375 4.59423 2.2711 3.85506 4.82166 5.99803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4243 15.4049 17.0037 5.47183 3.16392

CAGE analysis