Hb_000705_210

Information

Type -
Description -
Location Contig705: 126753-129076
Sequence    

Annotation

kegg
ID rcu:RCOM_0732500
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012066946.1
description PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
swissprot
ID Q40193
description Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1
trembl
ID A0A067LDP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02924 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab11c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55079: 126762-129063 , PASA_asmbl_55080: 126742-127908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_210 0.0 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
2 Hb_000987_070 0.0758296134 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
3 Hb_001105_070 0.0767743327 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
4 Hb_029866_090 0.0771302608 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
5 Hb_012053_070 0.0772540932 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
6 Hb_000510_130 0.0778836885 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
7 Hb_005431_010 0.0793802898 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
8 Hb_003057_100 0.0808614051 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
9 Hb_000417_040 0.0821593708 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
10 Hb_000005_080 0.0827970674 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
11 Hb_005941_040 0.0840582855 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
12 Hb_005305_080 0.0846845553 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_010504_020 0.0861600299 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_020956_020 0.0867241353 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
15 Hb_004738_100 0.0869866771 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
16 Hb_000876_070 0.0870452916 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_005289_030 0.0874899172 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_001247_100 0.0900094448 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
19 Hb_000000_460 0.09014783 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
20 Hb_003092_040 0.0915029016 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000705_210 Hb_000705_210 Hb_000987_070 Hb_000987_070 Hb_000705_210--Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_012053_070 Hb_012053_070 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_005431_010 Hb_005431_010 Hb_000705_210--Hb_005431_010 Hb_000987_070--Hb_001105_070 Hb_065525_020 Hb_065525_020 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_030736_080 Hb_030736_080 Hb_000987_070--Hb_030736_080 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_001105_070--Hb_012053_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_001105_070--Hb_065525_020 Hb_000876_070 Hb_000876_070 Hb_029866_090--Hb_000876_070 Hb_020956_020 Hb_020956_020 Hb_029866_090--Hb_020956_020 Hb_001552_020 Hb_001552_020 Hb_029866_090--Hb_001552_020 Hb_003057_100 Hb_003057_100 Hb_029866_090--Hb_003057_100 Hb_002739_100 Hb_002739_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_000009_160 Hb_000009_160 Hb_005431_010--Hb_000009_160 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_005431_010--Hb_009773_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8269 49.4032 22.3813 57.373 47.3285 56.4615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.2873 89.7081 84.4462 33.8676 23.9455

CAGE analysis