Hb_000987_070

Information

Type -
Description -
Location Contig987: 61686-68870
Sequence    

Annotation

kegg
ID tcc:TCM_021594
description Inflorescence meristem receptor-like kinase 2 isoform 1
nr
ID XP_007026563.1
description Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
swissprot
ID Q9SCT4
description Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1
trembl
ID A0A061EXS4
description Inflorescence meristem receptor-like kinase 2 isoform 1 OS=Theobroma cacao GN=TCM_021594 PE=4 SV=1
Gene Ontology
ID GO:0004672
description inflorescence meristem receptor-like kinase 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64663: 63519-68985 , PASA_asmbl_64664: 64829-65243
cDNA
(Sanger)
(ID:Location)		 003_D11.ab1: 63532-68804 , 007_F08.ab1: 63567-68941 , 019_I03.ab1: 63566-68941 , 022_N08.ab1: 63636-68985 , 023_M16.ab1: 63613-68925 , 023_M22.ab1: 63676-68888 , 027_L02.ab1: 63684-68917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_070 0.0 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
2 Hb_001105_070 0.0692829554 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
3 Hb_065525_020 0.0733477795 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
4 Hb_002030_040 0.0756291928 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
5 Hb_000705_210 0.0758296134 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
6 Hb_000201_120 0.0761067756 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
7 Hb_030736_080 0.0782514507 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001247_100 0.0805054894 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
9 Hb_009773_020 0.0806060062 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
10 Hb_033594_110 0.0862857375 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
11 Hb_000111_330 0.0868082542 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
12 Hb_000934_250 0.087447019 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_012053_070 0.0886946808 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
14 Hb_003126_090 0.0893762937 - - Rop1 [Hevea brasiliensis]
15 Hb_001016_030 0.0901320413 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
16 Hb_000635_180 0.0901591101 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_002234_070 0.090480153 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
18 Hb_001318_250 0.093268584 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
19 Hb_010042_010 0.0936405298 - - Urease accessory protein ureD, putative [Ricinus communis]
20 Hb_033594_150 0.0936597966 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_000987_070 Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000987_070--Hb_001105_070 Hb_065525_020 Hb_065525_020 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000705_210 Hb_000705_210 Hb_000987_070--Hb_000705_210 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_030736_080 Hb_030736_080 Hb_000987_070--Hb_030736_080 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_001105_070--Hb_065525_020 Hb_065525_020--Hb_009773_020 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250 Hb_002030_040--Hb_009773_020 Hb_000840_030 Hb_000840_030 Hb_002030_040--Hb_000840_030 Hb_004204_120 Hb_004204_120 Hb_002030_040--Hb_004204_120 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_000705_210--Hb_005431_010 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_002830_020 Hb_002830_020 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_000905_060 Hb_000905_060 Hb_030736_080--Hb_000905_060 Hb_000635_180 Hb_000635_180 Hb_030736_080--Hb_000635_180 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170 Hb_001247_100 Hb_001247_100 Hb_030736_080--Hb_001247_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.1997 42.6883 33.6292 81.3831 53.408 63.5169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.015 131.797 89.0325 33.3859 26.7304

CAGE analysis