Hb_000905_060

Information

Type -
Description -
Location Contig905: 64448-67258
Sequence    

Annotation

kegg
ID rcu:RCOM_1526030
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002513185.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FE79
description Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1
trembl
ID B9RHG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1526030 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba4c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61992: 64905-67183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_060 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_029388_020 0.0775071865 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024071_020 0.0785951184 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
4 Hb_030736_080 0.0787659511 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027472_040 0.0816227719 - - SKP1 [Hevea brasiliensis]
6 Hb_003787_010 0.0850769743 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_003126_050 0.0856426341 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
8 Hb_003125_200 0.0866685911 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
9 Hb_025645_010 0.0885503293 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
10 Hb_000417_040 0.0885622985 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
11 Hb_003078_040 0.0888713558 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
12 Hb_005846_040 0.0890033636 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
13 Hb_003092_040 0.089356823 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
14 Hb_028995_040 0.0899905939 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
15 Hb_000610_050 0.0907250043 - - skp1, putative [Ricinus communis]
16 Hb_001221_100 0.0909167698 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
17 Hb_000796_210 0.0912943055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001143_130 0.0920316294 - - peroxidase 2 [Hevea brasiliensis]
19 Hb_011344_210 0.0924805718 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
20 Hb_005365_030 0.0925357608 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]

Gene co-expression network

sample Hb_000905_060 Hb_000905_060 Hb_029388_020 Hb_029388_020 Hb_000905_060--Hb_029388_020 Hb_024071_020 Hb_024071_020 Hb_000905_060--Hb_024071_020 Hb_030736_080 Hb_030736_080 Hb_000905_060--Hb_030736_080 Hb_027472_040 Hb_027472_040 Hb_000905_060--Hb_027472_040 Hb_003787_010 Hb_003787_010 Hb_000905_060--Hb_003787_010 Hb_003126_050 Hb_003126_050 Hb_000905_060--Hb_003126_050 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_003125_200 Hb_003125_200 Hb_029388_020--Hb_003125_200 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140 Hb_029388_020--Hb_027472_040 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_000987_070 Hb_000987_070 Hb_030736_080--Hb_000987_070 Hb_000635_180 Hb_000635_180 Hb_030736_080--Hb_000635_180 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170 Hb_001247_100 Hb_001247_100 Hb_030736_080--Hb_001247_100 Hb_027472_040--Hb_000610_050 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4086 25.2772 19.5566 27.3369 25.2238 23.7353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9435 49.3664 29.9053 23.9998 7.22878

CAGE analysis