Hb_000457_100

Information

Type -
Description -
Location Contig457: 135455-138148
Sequence    

Annotation

kegg
ID rcu:RCOM_1679310
description prohibitin, putative
nr
ID XP_002509571.1
description prohibitin, putative [Ricinus communis]
swissprot
ID O04331
description Prohibitin-3, mitochondrial OS=Arabidopsis thaliana GN=PHB3 PE=1 SV=1
trembl
ID B9RBN7
description Prohibitin, putative OS=Ricinus communis GN=RCOM_1679310 PE=4 SV=1
Gene Ontology
ID GO:0005730
description prohibitin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43456: 135474-138064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_100 0.0 - - prohibitin, putative [Ricinus communis]
2 Hb_027472_040 0.0760743688 - - SKP1 [Hevea brasiliensis]
3 Hb_001481_090 0.0851532253 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
4 Hb_007576_080 0.0860965399 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
5 Hb_004837_240 0.0862648595 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
6 Hb_003935_020 0.088293612 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002585_040 0.089988011 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
8 Hb_002652_030 0.0909203835 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
9 Hb_000959_210 0.0920971566 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
10 Hb_000041_270 0.097927266 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
11 Hb_003125_200 0.0988909181 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
12 Hb_011609_100 0.1018316182 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
13 Hb_002234_140 0.1023618771 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
14 Hb_000589_120 0.1042620639 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
15 Hb_014109_040 0.1044147074 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
16 Hb_002346_010 0.1045431888 - - -
17 Hb_000563_230 0.1056082664 - - phospholipase d zeta, putative [Ricinus communis]
18 Hb_001369_220 0.1064476195 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
19 Hb_029388_020 0.1075970484 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006502_070 0.1079190539 - - separase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_100 Hb_000457_100 Hb_027472_040 Hb_027472_040 Hb_000457_100--Hb_027472_040 Hb_001481_090 Hb_001481_090 Hb_000457_100--Hb_001481_090 Hb_007576_080 Hb_007576_080 Hb_000457_100--Hb_007576_080 Hb_004837_240 Hb_004837_240 Hb_000457_100--Hb_004837_240 Hb_003935_020 Hb_003935_020 Hb_000457_100--Hb_003935_020 Hb_002585_040 Hb_002585_040 Hb_000457_100--Hb_002585_040 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_027472_040--Hb_007576_080 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_007576_080--Hb_002585_040 Hb_000684_380 Hb_000684_380 Hb_004837_240--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_004837_240--Hb_002320_040 Hb_004837_240--Hb_000589_120 Hb_004837_240--Hb_014109_040 Hb_004837_240--Hb_007576_080 Hb_000317_240 Hb_000317_240 Hb_004837_240--Hb_000317_240 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_003935_020--Hb_014109_040 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_003935_020--Hb_002652_030 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_002585_040--Hb_004032_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8533 28.1022 23.4662 14.8335 31.3085 22.3008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0712 51.2852 17.8619 33.7723 9.00177

CAGE analysis