Hb_000487_210

Information

Type -
Description -
Location Contig487: 198267-201908
Sequence    

Annotation

kegg
ID rcu:RCOM_1575880
description yth domain-containing protein, putative
nr
ID XP_012081973.1
description PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067K346
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45010: 195891-197506 , PASA_asmbl_45011: 195891-199038 , PASA_asmbl_45012: 195906-199038 , PASA_asmbl_45015: 200265-201540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_210 0.0 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
2 Hb_002585_040 0.0775329303 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
3 Hb_012753_170 0.0815166306 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
4 Hb_000979_170 0.0823601287 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_000679_310 0.0850842829 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
6 Hb_004970_090 0.0870490802 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
7 Hb_033834_030 0.0881407922 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
8 Hb_002553_040 0.0891804891 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
9 Hb_000076_160 0.0894940327 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
10 Hb_007451_010 0.0916517917 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
11 Hb_000220_010 0.0922367296 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
12 Hb_006916_040 0.0929297349 - - 60S ribosomal protein L7a, putative [Ricinus communis]
13 Hb_011909_120 0.0942948947 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
14 Hb_002461_060 0.0950625861 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
15 Hb_001214_060 0.0950956405 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
16 Hb_002175_030 0.0951069679 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
17 Hb_002217_110 0.0958420146 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
18 Hb_000563_230 0.0964545757 - - phospholipase d zeta, putative [Ricinus communis]
19 Hb_001357_150 0.0967981748 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
20 Hb_008453_140 0.0969805023 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]

Gene co-expression network

sample Hb_000487_210 Hb_000487_210 Hb_002585_040 Hb_002585_040 Hb_000487_210--Hb_002585_040 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030 Hb_007576_080 Hb_007576_080 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_008103_070 Hb_008103_070 Hb_012753_170--Hb_008103_070 Hb_001821_160 Hb_001821_160 Hb_012753_170--Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_012753_170--Hb_004785_100 Hb_006960_050 Hb_006960_050 Hb_012753_170--Hb_006960_050 Hb_001433_070 Hb_001433_070 Hb_012753_170--Hb_001433_070 Hb_002175_030 Hb_002175_030 Hb_012753_170--Hb_002175_030 Hb_006916_040 Hb_006916_040 Hb_000979_170--Hb_006916_040 Hb_003038_120 Hb_003038_120 Hb_000979_170--Hb_003038_120 Hb_000120_170 Hb_000120_170 Hb_000979_170--Hb_000120_170 Hb_000358_230 Hb_000358_230 Hb_000979_170--Hb_000358_230 Hb_004631_180 Hb_004631_180 Hb_000979_170--Hb_004631_180 Hb_000289_040 Hb_000289_040 Hb_000679_310--Hb_000289_040 Hb_000076_160 Hb_000076_160 Hb_000679_310--Hb_000076_160 Hb_011609_140 Hb_011609_140 Hb_000679_310--Hb_011609_140 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_028962_020 Hb_028962_020 Hb_000679_310--Hb_028962_020 Hb_002876_130 Hb_002876_130 Hb_000679_310--Hb_002876_130 Hb_017491_030 Hb_017491_030 Hb_004970_090--Hb_017491_030 Hb_004970_090--Hb_112798_020 Hb_005489_080 Hb_005489_080 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9908 13.7889 10.9314 11.727 12.9705 11.422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4189 15.7243 3.62787 9.06962 6.95754

CAGE analysis