Hb_002585_040

Information

Type -
Description -
Location Contig2585: 33221-51587
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01090g
description Cell division control protein 48 B
nr
ID XP_012066248.1
description PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
swissprot
ID Q9ZPR1
description Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1
trembl
ID A0A067L6L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23815 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cell division control protein 48 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26875: 36417-40476 , PASA_asmbl_26876: 40731-51501 , PASA_asmbl_26877: 40740-51501 , PASA_asmbl_26879: 48699-49002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002585_040 0.0 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
2 Hb_007576_080 0.0753693829 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
3 Hb_000563_230 0.0761718074 - - phospholipase d zeta, putative [Ricinus communis]
4 Hb_000487_210 0.0775329303 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_112798_020 0.0795517196 - - dnajc14 protein, putative [Ricinus communis]
6 Hb_002296_050 0.080098577 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
7 Hb_004032_430 0.0820743273 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
8 Hb_027472_040 0.0820989249 - - SKP1 [Hevea brasiliensis]
9 Hb_014109_040 0.0821809626 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
10 Hb_000796_210 0.0824435113 - - conserved hypothetical protein [Ricinus communis]
11 Hb_038172_010 0.0830063338 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
12 Hb_000175_100 0.0850488453 - - protein kinase, putative [Ricinus communis]
13 Hb_003935_020 0.0852453957 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004970_090 0.0858712125 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
15 Hb_007423_040 0.086571773 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
16 Hb_002652_030 0.0898382567 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
17 Hb_000457_100 0.089988011 - - prohibitin, putative [Ricinus communis]
18 Hb_002234_140 0.0911103118 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
19 Hb_004837_240 0.0913047206 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
20 Hb_002175_030 0.0926450779 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002585_040 Hb_002585_040 Hb_007576_080 Hb_007576_080 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_000563_230--Hb_008453_140 Hb_000563_230--Hb_014109_040 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000340_400 Hb_000340_400 Hb_000563_230--Hb_000340_400 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_000610_010 Hb_000610_010 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_000009_530 Hb_000009_530 Hb_002296_050--Hb_000009_530 Hb_004310_150 Hb_004310_150 Hb_004032_430--Hb_004310_150 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_004032_430--Hb_000959_210 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_003935_020 Hb_003935_020 Hb_004032_430--Hb_003935_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16284 9.81595 6.50186 6.24133 9.73823 9.3156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14417 14.0858 3.65524 8.27468 3.83683

CAGE analysis