Hb_000979_170

Information

Type -
Description -
Location Contig979: 186863-194546
Sequence    

Annotation

kegg
ID rcu:RCOM_0629240
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_002527787.1
description clathrin assembly protein, putative [Ricinus communis]
swissprot
ID Q8LBH2
description Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2
trembl
ID B9SP68
description Clathrin assembly protein, putative OS=Ricinus communis GN=RCOM_0629240 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g01600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64310: 186913-189666 , PASA_asmbl_64311: 188827-189040 , PASA_asmbl_64312: 189667-192686 , PASA_asmbl_64313: 193080-193205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_170 0.0 - - clathrin assembly protein, putative [Ricinus communis]
2 Hb_006916_040 0.079992284 - - 60S ribosomal protein L7a, putative [Ricinus communis]
3 Hb_000487_210 0.0823601287 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
4 Hb_003038_120 0.0832901985 - - rer1 protein, putative [Ricinus communis]
5 Hb_000120_170 0.0843492426 - - selenoprotein [Populus trichocarpa]
6 Hb_000358_230 0.0901994314 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
7 Hb_004631_180 0.0906197263 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
8 Hb_001051_080 0.0914065366 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
9 Hb_000076_160 0.0924461128 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
10 Hb_000928_220 0.0941531299 - - PREDICTED: protein SCAI [Jatropha curcas]
11 Hb_012753_170 0.0942929434 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
12 Hb_000576_020 0.0950153093 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
13 Hb_013738_020 0.097190652 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_000402_080 0.0977401668 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
15 Hb_000120_430 0.0980456429 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
16 Hb_007416_300 0.0992336477 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
17 Hb_001077_030 0.0993139472 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
18 Hb_000705_170 0.0999010956 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
19 Hb_003096_060 0.1018659941 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
20 Hb_000220_010 0.1029274462 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_170 Hb_000979_170 Hb_006916_040 Hb_006916_040 Hb_000979_170--Hb_006916_040 Hb_000487_210 Hb_000487_210 Hb_000979_170--Hb_000487_210 Hb_003038_120 Hb_003038_120 Hb_000979_170--Hb_003038_120 Hb_000120_170 Hb_000120_170 Hb_000979_170--Hb_000120_170 Hb_000358_230 Hb_000358_230 Hb_000979_170--Hb_000358_230 Hb_004631_180 Hb_004631_180 Hb_000979_170--Hb_004631_180 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_002585_040 Hb_002585_040 Hb_000487_210--Hb_002585_040 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_000487_210--Hb_033834_030 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000009_400 Hb_000009_400 Hb_000120_170--Hb_000009_400 Hb_000087_060 Hb_000087_060 Hb_000358_230--Hb_000087_060 Hb_000358_230--Hb_000076_160 Hb_000358_230--Hb_003096_060 Hb_001205_200 Hb_001205_200 Hb_000358_230--Hb_001205_200 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000358_230--Hb_000928_220 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4528 16.4935 15.7327 20.3082 23.4247 14.8656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.762 16.2225 5.9875 11.1355 8.36743

CAGE analysis