Hb_003038_120

Information

Type -
Description -
Location Contig3038: 64211-66714
Sequence    

Annotation

kegg
ID rcu:RCOM_0535570
description rer1 protein, putative
nr
ID XP_002521560.1
description rer1 protein, putative [Ricinus communis]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID B9S6E1
description Rer1 protein, putative OS=Ricinus communis GN=RCOM_0535570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rer1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_120 0.0 - - rer1 protein, putative [Ricinus communis]
2 Hb_000776_100 0.0586149506 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
3 Hb_003897_040 0.0655448578 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_032990_010 0.0658858607 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
5 Hb_003096_060 0.0661935966 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
6 Hb_005460_050 0.0699187193 - - COR413-PM2, putative [Ricinus communis]
7 Hb_006588_070 0.0767710192 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_002783_170 0.07942687 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
9 Hb_000737_030 0.0799557599 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
10 Hb_000034_080 0.0806543425 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
11 Hb_000101_380 0.081103604 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
12 Hb_001077_030 0.0822346348 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
13 Hb_000979_170 0.0832901985 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_000414_050 0.0841651029 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
15 Hb_000933_010 0.0847597804 - - -
16 Hb_007951_040 0.0856209009 - - signal peptidase family protein [Populus trichocarpa]
17 Hb_007062_040 0.0862686457 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
18 Hb_000261_230 0.0870284478 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
19 Hb_001051_080 0.0901501236 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
20 Hb_000358_230 0.0903243211 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003038_120 Hb_003038_120 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_000414_050 Hb_000414_050 Hb_000776_100--Hb_000414_050 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_000776_100--Hb_006588_070 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_003897_040--Hb_005460_050 Hb_002398_030 Hb_002398_030 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_003897_040--Hb_032990_010 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_005460_050--Hb_007062_040 Hb_002872_030 Hb_002872_030 Hb_006588_070--Hb_002872_030 Hb_027428_010 Hb_027428_010 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9094 13.5485 20.1829 20.1767 17.8518 17.3275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4448 11.2168 5.22306 11.5982 7.64596

CAGE analysis