Hb_007062_040

Information

Type -
Description -
Location Contig7062: 81378-101765
Sequence    

Annotation

kegg
ID zma:100383867
description putative ARF GTPase activating domain protein with ankyrin repeat-containing protein
nr
ID XP_010112275.1
description ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID W9SAE5
description ADP-ribosylation factor GTPase-activating protein AGD2 OS=Morus notabilis GN=L484_014957 PE=4 SV=1
Gene Ontology
ID GO:0005737
description adp-ribosylation factor gtpase-activating protein agd4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55118: 92237-101572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007062_040 0.0 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
2 Hb_032990_010 0.045192145 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
3 Hb_000046_570 0.0497235565 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_004586_060 0.0521944959 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
5 Hb_001856_180 0.0583712938 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_001405_210 0.0604712223 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
7 Hb_005460_050 0.0611509094 - - COR413-PM2, putative [Ricinus communis]
8 Hb_000731_220 0.0617165241 - - PREDICTED: derlin-2.2 [Jatropha curcas]
9 Hb_003912_040 0.0631917949 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
10 Hb_007248_030 0.0654428512 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
11 Hb_005381_020 0.0685000456 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
12 Hb_000236_490 0.0685277445 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_001377_310 0.0691355721 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
14 Hb_000737_030 0.0724149371 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
15 Hb_001241_010 0.0767425383 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_008226_090 0.0772876459 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
17 Hb_008568_020 0.0776729631 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
18 Hb_003096_060 0.0779655431 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
19 Hb_007413_040 0.0782054625 - - myo inositol monophosphatase, putative [Ricinus communis]
20 Hb_183433_010 0.0783328241 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007062_040 Hb_007062_040 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_000046_570 Hb_000046_570 Hb_007062_040--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_032990_010--Hb_000046_570 Hb_032990_010--Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_004586_060--Hb_007248_030 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050 Hb_000345_160 Hb_000345_160 Hb_001856_180--Hb_000345_160 Hb_001856_180--Hb_007248_030 Hb_001856_180--Hb_001405_210 Hb_001856_180--Hb_000702_090 Hb_001856_180--Hb_001377_310 Hb_001405_210--Hb_007248_030 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_001405_210--Hb_004586_060 Hb_005460_050--Hb_001377_310 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03063 7.70973 8.98896 9.3904 5.24472 7.09641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46724 5.06859 2.6526 6.05805 5.35713

CAGE analysis