Hb_001856_180

Information

Type -
Description -
Location Contig1856: 236073-240261
Sequence    

Annotation

kegg
ID rcu:RCOM_0048870
description cop9 complex subunit 7a, putative
nr
ID XP_012084840.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
swissprot
ID Q54KZ8
description Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1
trembl
ID A0A067K648
description Eukaryotic translation initiation factor 3 subunit M OS=Jatropha curcas GN=JCGZ_19963 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit m

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18169: 236061-240178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_180 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
2 Hb_000345_160 0.0557662621 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_007248_030 0.0569103804 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
4 Hb_007062_040 0.0583712938 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
5 Hb_001405_210 0.0622076071 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
6 Hb_000702_090 0.0652768075 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_001377_310 0.0661849743 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_000046_570 0.0664133709 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
9 Hb_000336_020 0.0677926436 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
10 Hb_004586_060 0.0686079492 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
11 Hb_003912_040 0.0722556377 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
12 Hb_021374_010 0.0725805415 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
13 Hb_000214_050 0.0739715151 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
14 Hb_001481_060 0.0750319455 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
15 Hb_002883_030 0.0751874847 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
16 Hb_086063_020 0.0754658685 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
17 Hb_001002_060 0.076082046 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
18 Hb_004037_020 0.0768094578 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
19 Hb_000617_010 0.0769375116 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
20 Hb_021165_010 0.0781676595 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001856_180 Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_001856_180--Hb_000345_160 Hb_007248_030 Hb_007248_030 Hb_001856_180--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_001856_180--Hb_007062_040 Hb_001405_210 Hb_001405_210 Hb_001856_180--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_001856_180--Hb_000702_090 Hb_001377_310 Hb_001377_310 Hb_001856_180--Hb_001377_310 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_007248_030--Hb_001481_060 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_000046_570 Hb_000046_570 Hb_007062_040--Hb_000046_570 Hb_007062_040--Hb_004586_060 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_001405_210--Hb_000046_570 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_001405_210--Hb_004586_060 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_001377_310--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0452 20.5161 25.7763 28.4815 14.702 21.9378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0636 11.5176 9.49892 18.4966 20.5351

CAGE analysis