Hb_005460_050

Information

Type -
Description -
Location Contig5460: 62467-64183
Sequence    

Annotation

kegg
ID rcu:RCOM_0938820
description COR413-PM2, putative
nr
ID XP_002519121.1
description COR413-PM2, putative [Ricinus communis]
swissprot
ID Q9SVL6
description Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1
trembl
ID B9RZF2
description COR413-PM2, putative OS=Ricinus communis GN=RCOM_0938820 PE=4 SV=1
Gene Ontology
ID GO:0005773
description cold-regulated 413 plasma membrane protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47984: 62447-64012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005460_050 0.0 - - COR413-PM2, putative [Ricinus communis]
2 Hb_001377_310 0.0505463934 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
3 Hb_032990_010 0.0524243443 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
4 Hb_000933_010 0.0540930473 - - -
5 Hb_001635_160 0.0563335968 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
6 Hb_003897_040 0.0567693456 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
7 Hb_007062_040 0.0611509094 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
8 Hb_000035_110 0.0615553452 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
9 Hb_004586_060 0.0622600925 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
10 Hb_000046_570 0.0628106406 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
11 Hb_000737_030 0.0676147 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
12 Hb_008226_090 0.0688756411 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
13 Hb_001135_120 0.0698106573 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
14 Hb_003038_120 0.0699187193 - - rer1 protein, putative [Ricinus communis]
15 Hb_003096_060 0.0711337857 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
16 Hb_000170_090 0.0717984754 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
17 Hb_008568_020 0.0722578212 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
18 Hb_003861_050 0.0731645843 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
19 Hb_000617_100 0.0733901936 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
20 Hb_004109_230 0.0735701332 - - heat shock protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005460_050 Hb_005460_050 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_032990_010 Hb_032990_010 Hb_005460_050--Hb_032990_010 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_032990_010--Hb_007062_040 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_032990_010--Hb_004586_060 Hb_000933_010--Hb_003897_040 Hb_003549_090 Hb_003549_090 Hb_000933_010--Hb_003549_090 Hb_005723_020 Hb_005723_020 Hb_000933_010--Hb_005723_020 Hb_002398_030 Hb_002398_030 Hb_000933_010--Hb_002398_030 Hb_008226_090 Hb_008226_090 Hb_000933_010--Hb_008226_090 Hb_008120_030 Hb_008120_030 Hb_001635_160--Hb_008120_030 Hb_001635_160--Hb_000035_110 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001635_160--Hb_001377_310 Hb_001635_160--Hb_002398_030 Hb_003897_040--Hb_003038_120 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_003897_040--Hb_032990_010 Hb_007062_040--Hb_000046_570 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5307 23.7577 26.2075 30.9217 22.1712 28.2324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7992 16.2607 12.7605 21.98 15.3218

CAGE analysis