Hb_008226_090

Information

Type -
Description -
Location Contig8226: 54353-57597
Sequence    

Annotation

kegg
ID cit:102615254
description reticulon-like protein B16-like
nr
ID XP_012091153.1
description PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
swissprot
ID Q8GYH6
description Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1
trembl
ID A0A067JFU4
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_03329 PE=4 SV=1
Gene Ontology
ID GO:0005634
description reticulon-like protein b16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59652: 56861-57101 , PASA_asmbl_59653: 54481-57276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_090 0.0 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
2 Hb_005723_020 0.0642259995 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002014_040 0.0649329433 - - site-1 protease, putative [Ricinus communis]
4 Hb_008568_020 0.0661904374 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
5 Hb_001135_120 0.0674242662 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_103747_020 0.0679361118 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
7 Hb_003912_040 0.0682332864 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
8 Hb_005460_050 0.0688756411 - - COR413-PM2, putative [Ricinus communis]
9 Hb_003096_060 0.0691020506 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_004129_070 0.0702516815 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
11 Hb_000362_170 0.0729625495 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
12 Hb_010272_010 0.0739114645 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
13 Hb_000933_010 0.0751073345 - - -
14 Hb_005946_210 0.076073972 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
15 Hb_000635_040 0.0763432699 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_000836_410 0.0764638438 - - sec10, putative [Ricinus communis]
17 Hb_000205_130 0.0768643061 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_001377_310 0.0769467151 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
19 Hb_007062_040 0.0772876459 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
20 Hb_000261_240 0.0777178994 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]

Gene co-expression network

sample Hb_008226_090 Hb_008226_090 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_005723_020--Hb_103747_020 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_103747_020--Hb_002686_040 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_000046_570 Hb_000046_570 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_007062_040 Hb_007062_040 Hb_003912_040--Hb_007062_040 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5857 8.97045 8.80294 8.77218 8.30128 8.87444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05141 4.41727 3.76459 5.5554 5.58686

CAGE analysis