Hb_000645_170

Information

Type -
Description -
Location Contig645: 131599-147816
Sequence    

Annotation

kegg
ID rcu:RCOM_1000010
description hypothetical protein
nr
ID XP_002519202.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5SP90
description Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1
trembl
ID B9RZN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52269: 131594-147839 , PASA_asmbl_52271: 136492-136928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003927_040 0.0548032278 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
3 Hb_008568_020 0.0562654572 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
4 Hb_001430_080 0.0591197873 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
5 Hb_004236_050 0.0601192933 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
6 Hb_001636_050 0.062178825 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
7 Hb_154580_010 0.0626560405 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
8 Hb_004976_010 0.0637419216 - - hypothetical protein RCOM_1429110 [Ricinus communis]
9 Hb_003929_280 0.0643651841 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
10 Hb_060094_020 0.064771185 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
11 Hb_004837_180 0.0659442951 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000836_410 0.0664374913 - - sec10, putative [Ricinus communis]
13 Hb_007590_020 0.0665636596 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
14 Hb_000861_080 0.068584512 - - PREDICTED: protein ELC-like [Jatropha curcas]
15 Hb_007044_110 0.0690365765 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_140049_040 0.0701431523 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
17 Hb_055235_020 0.0707014986 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
18 Hb_001751_140 0.0710932048 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
19 Hb_001225_030 0.0713357771 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
20 Hb_000243_210 0.0721084108 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000645_170 Hb_000645_170 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_004236_050--Hb_003929_280 Hb_004837_180 Hb_004837_180 Hb_004236_050--Hb_004837_180 Hb_004236_050--Hb_003927_040 Hb_007590_020 Hb_007590_020 Hb_004236_050--Hb_007590_020 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_001636_050--Hb_004976_010 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_003096_060 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0479 22.4212 20.0042 11.8582 15.1163 14.851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9214 11.3901 8.14834 11.6806 13.9813

CAGE analysis