Hb_007044_110

Information

Type -
Description -
Location Contig7044: 83663-96603
Sequence    

Annotation

kegg
ID rcu:RCOM_0597470
description nucleic acid binding protein, putative
nr
ID XP_002525972.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q6DD45
description Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1
trembl
ID B9SJ03
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0597470 PE=4 SV=1
Gene Ontology
ID GO:0003676
description proline-rich spliceosome-associated family protein zinc knuckle family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55023: 85128-93126 , PASA_asmbl_55024: 93134-96668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_110 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000205_260 0.0328647404 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
3 Hb_000457_230 0.0489446377 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_055235_020 0.0505997632 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
5 Hb_005523_020 0.0512165626 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
6 Hb_001636_050 0.0524224241 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
7 Hb_004976_010 0.0564271874 - - hypothetical protein RCOM_1429110 [Ricinus communis]
8 Hb_005288_070 0.0628131284 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_011972_020 0.066404632 - - protein binding protein, putative [Ricinus communis]
10 Hb_008059_010 0.0665264027 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
11 Hb_000523_080 0.0675112801 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
12 Hb_000879_040 0.0682281233 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_000836_410 0.0684536284 - - sec10, putative [Ricinus communis]
14 Hb_000645_170 0.0690365765 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000318_120 0.0690612357 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
16 Hb_001430_080 0.0696371561 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
17 Hb_007283_010 0.071963058 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
18 Hb_007305_020 0.0720017217 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
19 Hb_000563_420 0.0737196491 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
20 Hb_003943_020 0.0740335647 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_110 Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_007044_110--Hb_000457_230 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_001636_050 Hb_001636_050 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_004976_010 Hb_055235_020--Hb_001636_050 Hb_055235_020--Hb_000457_230 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090 Hb_005523_020--Hb_007305_020 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.68018 13.8657 13.755 6.51089 10.8004 9.0441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19611 6.06973 4.53827 9.17787 12.7505

CAGE analysis