Hb_007305_020

Information

Type -
Description -
Location Contig7305: 17058-27385
Sequence    

Annotation

kegg
ID rcu:RCOM_1691060
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_012086763.1
description PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
swissprot
ID Q9T014
description Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2
trembl
ID A0A067JMX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20487 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein spa1-related 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55946: 16914-27917 , PASA_asmbl_55947: 16914-26916 , PASA_asmbl_55948: 16914-26916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007305_020 0.0 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
2 Hb_000086_150 0.0492965998 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
3 Hb_000205_260 0.065512025 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
4 Hb_002571_030 0.0658225971 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
5 Hb_055235_020 0.0714818577 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
6 Hb_007044_110 0.0720017217 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_005523_020 0.0720073341 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
8 Hb_098209_010 0.0761282687 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
9 Hb_004324_330 0.0771104028 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
10 Hb_002233_130 0.077962797 - - transporter, putative [Ricinus communis]
11 Hb_001231_090 0.0785549889 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_000563_420 0.0799288881 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
13 Hb_000318_120 0.0810214911 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
14 Hb_089140_050 0.0813484188 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
15 Hb_009771_110 0.0813980785 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
16 Hb_002631_140 0.0831507191 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
17 Hb_013358_070 0.0838813831 - - protein with unknown function [Ricinus communis]
18 Hb_007929_080 0.0840252805 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
19 Hb_179154_020 0.0840688107 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_007818_040 0.0851438713 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007305_020 Hb_007305_020 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_009486_080 Hb_009486_080 Hb_000086_150--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_000086_150--Hb_000573_060 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000260_560 Hb_000260_560 Hb_000086_150--Hb_000260_560 Hb_002641_130 Hb_002641_130 Hb_000086_150--Hb_002641_130 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_007818_040 Hb_007818_040 Hb_002571_030--Hb_007818_040 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_055235_020--Hb_000457_230 Hb_007044_110--Hb_000457_230 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_007044_110--Hb_004976_010 Hb_005523_020--Hb_000457_230 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95896 11.9986 10.5627 6.15217 12.1036 9.05351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3144 3.5011 3.08136 6.72835 12.0519

CAGE analysis