Hb_055235_020

Information

Type -
Description -
Location Contig55235: 1025-4092
Sequence    

Annotation

kegg
ID rcu:RCOM_0169130
description hypothetical protein
nr
ID XP_012084769.1
description PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
swissprot
ID Q8LGI2
description Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2
trembl
ID A0A067JTH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19896 PE=4 SV=1
Gene Ontology
ID GO:0005774
description probable mitochondrial saccharopine dehydrogenase-like oxidoreductase at5g39410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48306: 1087-3679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055235_020 0.0 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
2 Hb_000318_120 0.0499239908 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
3 Hb_011972_020 0.0500429913 - - protein binding protein, putative [Ricinus communis]
4 Hb_007044_110 0.0505997632 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_004976_010 0.0529993692 - - hypothetical protein RCOM_1429110 [Ricinus communis]
6 Hb_001636_050 0.0631573748 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
7 Hb_000457_230 0.0634114367 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_002014_040 0.0664879084 - - site-1 protease, putative [Ricinus communis]
9 Hb_000205_260 0.068885491 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
10 Hb_000523_080 0.0705624529 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
11 Hb_000645_170 0.0707014986 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007305_020 0.0714818577 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
13 Hb_000563_420 0.0717019586 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
14 Hb_000836_410 0.0719092453 - - sec10, putative [Ricinus communis]
15 Hb_000710_040 0.0724410183 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
16 Hb_000238_040 0.0746849488 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
17 Hb_000243_210 0.0747460521 - - protein with unknown function [Ricinus communis]
18 Hb_001430_080 0.0756185848 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
19 Hb_000527_010 0.0762564644 - - katanin P80 subunit, putative [Ricinus communis]
20 Hb_013358_070 0.0765392706 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_055235_020 Hb_055235_020 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_007044_110 Hb_007044_110 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_000457_230 Hb_000457_230 Hb_055235_020--Hb_000457_230 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_007044_110--Hb_004976_010 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_004976_010--Hb_001636_050 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1299 17.1111 17.3748 11.6246 16.8621 11.3303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88404 7.85646 5.16925 11.6838 15.0811

CAGE analysis