Hb_001673_050

Information

Type -
Description -
Location Contig1673: 62600-73049
Sequence    

Annotation

kegg
ID tcc:TCM_023086
description Ubiquitin-specific protease 8 isoform 1
nr
ID XP_012074282.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C585
description Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=2 SV=2
trembl
ID A0A067KIX9
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_08731 PE=3 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15443: 62847-63567 , PASA_asmbl_15444: 63574-66322 , PASA_asmbl_15445: 65093-65210 , PASA_asmbl_15446: 66186-66790 , PASA_asmbl_15447: 67074-72904 , PASA_asmbl_15448: 67950-72904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_050 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
2 Hb_002849_170 0.0492266023 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
3 Hb_000099_040 0.0537539479 - - unnamed protein product [Coffea canephora]
4 Hb_001668_010 0.0554646703 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
5 Hb_004976_010 0.0572202969 - - hypothetical protein RCOM_1429110 [Ricinus communis]
6 Hb_007426_060 0.0582012965 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
7 Hb_004429_010 0.0595105215 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_000949_020 0.0595742828 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
9 Hb_003142_040 0.0600048127 - - Sf3a3 [Gossypium arboreum]
10 Hb_001723_010 0.0607817281 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
11 Hb_002027_280 0.0615533539 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
12 Hb_007818_030 0.0633502656 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
13 Hb_005542_140 0.0647005185 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
14 Hb_134362_010 0.0649816351 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
15 Hb_000176_100 0.0651319599 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
16 Hb_029977_040 0.0666701409 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
17 Hb_000340_030 0.0673673972 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
18 Hb_003124_160 0.0676534183 - - dynamin, putative [Ricinus communis]
19 Hb_000676_330 0.0678214713 - - protein with unknown function [Ricinus communis]
20 Hb_001221_090 0.0684104136 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001673_050 Hb_001673_050 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_000340_030 Hb_000340_030 Hb_002849_170--Hb_000340_030 Hb_031641_010 Hb_031641_010 Hb_002849_170--Hb_031641_010 Hb_001723_010 Hb_001723_010 Hb_002849_170--Hb_001723_010 Hb_000529_060 Hb_000529_060 Hb_002849_170--Hb_000529_060 Hb_002849_170--Hb_004976_010 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_005542_140 Hb_005542_140 Hb_001668_010--Hb_005542_140 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_007426_060--Hb_001534_210 Hb_007426_060--Hb_005542_140 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37586 13.5559 8.36324 7.6544 9.5409 6.44207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87459 4.45963 4.36227 9.55154 8.68903

CAGE analysis